Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
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 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGGGACCGCCGCCATGATCGCGATCGGGATAGAGATTATGACCGTTCGCGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttcaatggtttctttgctcacttctctctgcctttcttgtatagcgatttattccgaccataaacttttgacagtataatgacaaagaaacacaatgaaattatctgcttttgatatggaaacctttatatcactaggagctaacattagacagttgttattttcag

Basic information

species Oryza sativa
transcript LOC_Os03g62640.5
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g62640.5 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G118014_T03 (Zea mays), 5'ss of exon 3
ATAGGGACCGCCGCCATGATCGCGATCGGGATAGAGATTATGACCGTTCGCGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG-
   ||||||| |||||||| ||||| |||||||| ||||||||||| || || ||  |||| ||||||||||| || ||||| || ||||||||||||||   |||| | | |||  |       ||   || | |    |  |  ||  |  |    |   | ||||  |    ||||    ||| ||  ||                                                                                   
---GGGACCGTCGCCATGACCGCGACCGGGATAGGGATTATGACCGCTCCCGCGGATATGACTCAAGGAGAAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctgaataataggcacacttttttatttgaaacccttgtgcctcacatcgttgactgacc-caggtatttgtt--tatgatttcag----------------------------------------------------------------------------------

upper sequence: LOC_Os03g62640.5 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G069916_T04 (Zea mays), 5'ss of exon 11
ATAGGGACCGCCGCCATGATCGCGATCGGGATAGAGATTATGACCGTTCGCGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttcaatggtttctttgctcacttctctctgcctttcttgtatagcgatttattccgaccataaacttttgacagtataatgacaaagaaacacaatgaaattatctgcttttgatatggaaacctttatatcactaggagctaacattagacagttgttattttcag
   ||||| | |||||||| || ||||||||||| ||||||||||| || ||||| |||||||||||||| || || ||||| || ||||||||||||||        ||  ||| |   ||   | | |||         || || |  | | ||||       | | |  |   | | ||||| | |     | |      | ||  | |  ||||  |||| | ||                                            
---GGGACAGGCGCCATGACCGTGATCGGGATAGGGATTATGACCGCTCCCGTGGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAG--------CA--Ggtattgctgaataatactc---------ctcgtgtcacaaattata------agacatctcccaaattataa-ggcgtcttagcttttctagat-gtatttttttattatgtataca-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29689015|gb|CB685290.1|CB685290
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88304603|gb|CI518259.1|CI518259
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCCCAG                         GCCCCACGATANATACTGAATCTGGTGCTCCATGATGGCTGATTTTGAAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|29681221|gb|CB677496.1|CB677496
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88515580|gb|CI443234.1|CI443234
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCCCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88295664|gb|CI530227.1|CI530227
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88478005|gb|CI415276.1|CI415276
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88477396|gb|CI414667.1|CI414667
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88446499|gb|CI536530.1|CI536530
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88268607|gb|CI378542.1|CI378542
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|55409535|gb|CV721911.1|CV721911
EST:     GGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: GGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|86887183|gb|CI325998.1|CI325998
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|29621719|gb|CB626730.1|CB626730
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88663675|gb|CI484912.1|CI484912
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|87008593|gb|CI315051.1|CI315051
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88289186|gb|CI553162.1|CI553162
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88446058|gb|CI552564.1|CI552564
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|3767788|gb|AU031815.1|AU031815
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATNTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|29625503|gb|CB630514.1|CB630514
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88528009|gb|CI456209.1|CI456209
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATANATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|29627006|gb|CB632017.1|CB632017
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88520887|gb|CI448541.1|CI448541
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88455344|gb|CI519365.1|CI519365
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88842454|gb|CI081710.1|CI081710
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88469590|gb|CI406861.1|CI406861
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88448238|gb|CI541824.1|CI541824
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|29666282|gb|CB662557.1|CB662557
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88517125|gb|CI444607.1|CI444607
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|29623141|gb|CB628152.1|CB628152
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88662304|gb|CI466723.1|CI466723
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|18385491|gb|BM418690.1|BM418690
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88223512|gb|CI223361.1|CI223361
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88319289|gb|CI515750.1|CI515750
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88479846|gb|CI417117.1|CI417117
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88529949|gb|CI458307.1|CI458307
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88319497|gb|CI518341.1|CI518341
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88526700|gb|CI454778.1|CI454778
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88662984|gb|CI476257.1|CI476257
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|86846273|gb|CI339860.1|CI339860
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|86838448|gb|CI327797.1|CI327797
EST:     CTTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88518874|gb|CI446528.1|CI446528
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|218504071|gb|FG966298.1|FG966298
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|29674494|gb|CB670769.1|CB670769
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88504355|gb|CI431861.1|CI431861
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|29687899|gb|CB684174.1|CB684174
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88374419|gb|CI515903.1|CI515903
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88841254|gb|CI080708.1|CI080708
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88319174|gb|CI513238.1|CI513238
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88662512|gb|CI470251.1|CI470251
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88482770|gb|CI420041.1|CI420041
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88960782|gb|CI382463.1|CI382463
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACCTTCTCGATCCAGGGAGCCCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88554007|gb|CI484155.1|CI484155
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88516405|gb|CI444059.1|CI444059
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|58680707|gb|CK069394.1|CK069394
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88662215|gb|CI465258.1|CI465258
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88511327|gb|CI438833.1|CI438833
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|30227731|gb|CB965623.1|CB965623
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|29626367|gb|CB631378.1|CB631378
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|15852100|gb|BI804896.1|BI804896
EST:     CGT-GCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88664125|gb|CI490903.1|CI490903
EST:     CNTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88513165|gb|CI440671.1|CI440671
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|27554295|gb|CA998195.1|CA998195
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|86886570|gb|CI322802.1|CI322802
EST:     CGTGCCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88294969|gb|CI522923.1|CI522923
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88524634|gb|CI453473.1|CI453473
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|86866011|gb|CI336775.1|CI336775
EST:     CGTGGCCATGATTCAAGGAGAA-GGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGGCTCCATGATGGCTGATTTTGGAG
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGT-GCTCCATGATGGCTGATTTTGGAG
EST: gi|88661489|gb|CI455581.1|CI455581
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88661526|gb|CI456109.1|CI456109
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|29672227|gb|CB668502.1|CB668502
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88662044|gb|CI463027.1|CI463027
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88662947|gb|CI475865.1|CI475865
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88474040|gb|CI411311.1|CI411311
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|86256324|gb|CI012614.1|CI012614
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATTCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88366566|gb|CI556350.1|CI556350
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88439936|gb|CI543853.1|CI543853
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|86493823|gb|CI136456.1|CI136456
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|86871357|gb|CI329754.1|CI329754
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88384170|gb|CI548511.1|CI548511
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88221770|gb|CI221726.1|CI221726
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGCTGATTTTGGAGT
EST: gi|88304265|gb|CI515538.1|CI515538
EST:     CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAG                         GCGCCACGATAGATACTGAATCTGGTGCTCCATGATGGGCTGATTTTGGAG
genomic: CGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttca ... ttattttcagGCGCCACGATAGATACTGAATCTGGTGCTCCATGAT-GGCTGATTTTGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGGGACCGCCGCCATGATCGCGATCGGGATAGAGATTATGACCGTTCGCGTGGCCATGATTCAAGGAGAAGGGAACGTTCTCGATCCAGGGAGCGCAGgtatggttcaatggtttctttgctcacttctctctgcctttcttgtatagcgatttattccgaccataaacttttgacagtataatgacaaagaaacacaatgaaattatctgcttttgatatggaaacctttatatcactaggagctaacattagacagttgttattttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA