1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTGGAGCCTTGATATCATGATTTTATCATTATAAAATATTCTATGCCGCCTTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgcttttccatcctagtttcattttcatgtagtgtcagcataatctgaaagtacatgctgtgctcatcag
species | Oryza sativa |
transcript | LOC_Os03g62640.4 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGCCCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29681221|gb|CB677496.1|CB677496
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29674745|gb|CB671020.1|CB671020
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29621719|gb|CB626730.1|CB626730
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|87008593|gb|CI315051.1|CI315051
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: AGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29625503|gb|CB630514.1|CB630514
genomic: AGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29627006|gb|CB632017.1|CB632017
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29656041|gb|CB652316.1|CB652316
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGAAAGGAATGGTCAGGCATCCAGGGATAGAGAEST: gi|88842454|gb|CI081710.1|CI081710
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: AGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29678407|gb|CB674682.1|CB674682
genomic: AGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29666282|gb|CB662557.1|CB662557
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29623141|gb|CB628152.1|CB628152
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29639322|gb|CB644331.1|CB644331
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|18385491|gb|BM418690.1|BM418690
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGTAGAGAAGTAAAAGAAGGAAGCCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAGGGACCGCCAATGGTCAGGCATCCAGGGATAGAGEST: gi|29617713|gb|CB622725.1|CB622725
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCG-CAATGGTCAGGCATCCAGGGATAGAG
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|88223512|gb|CI223361.1|CI223361
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29674494|gb|CB670769.1|CB670769
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29687899|gb|CB684174.1|CB684174
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|88841254|gb|CI080708.1|CI080708
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: CAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29623912|gb|CB628923.1|CB628923
genomic: CAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|58680707|gb|CK069394.1|CK069394
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29626367|gb|CB631378.1|CB631378
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29639320|gb|CB644329.1|CB644329
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATAGG-CAGGCATCCAGGGATAGAGEST: gi|15852100|gb|BI804896.1|BI804896
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAAT-GGTCAGGCATCCAGGGATAGAG
EST: CCAGGAGGAGAGAAGTAAAAGAAGGAA-GCCCCTGAAGATGACACGGCG ATCAAGAGAATACAGC-AGGACC-CAATGGTCA-GCATCCAGGGATAGAGEST: gi|86886570|gb|CI322802.1|CI322802
genomic: CCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACA-GGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAG
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAACATGACAGGCG ATCAATAGAATACAGCAAGGACCGCAAT-GTCAGGCATCCAGGGATAGAGAEST: gi|29672227|gb|CB668502.1|CB668502
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29681846|gb|CB678121.1|CB678121
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|29633032|gb|CB638041.1|CB638041
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGGCCGCAATGGTCAGGCATCCAGGGATAGAGAEST: gi|86256324|gb|CI012614.1|CI012614
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
EST: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCG ATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
genomic: TTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgctt ... tgctcatcagATCAAGAGAATACAGCAAGGACCGCAATGGTCAGGCATCCAGGGATAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGAGCCTTGATATCATGATTTTATCATTATAAAATATTCTATGCCGCCTTCCAGGAGGAGAGAAGTAAAAGAAGGAAGGCACCTGAAGATGACAGGCGgtatgtgcttttccatcctagtttcattttcatgtagtgtcagcataatctgaaagtacatgctgtgctcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG