1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGCCAGTCCTTGGTCCGGAAACTCGTGCACGTGCTCAAGCGAGCATCTCTGATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggccagaacacattgactgaatgtcctttttagataacaaaccactaagtgctatgcagtctaattgaaattcagccaacaaaatcatttaccat...
species | Oryza sativa |
transcript | LOC_Os03g51650.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATTGTCTTCATCCTATCCTCTGTCATCCTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|29669369|gb|CB665644.1|CB665644
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|66920616|gb|CX107464.1|CX107464
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|88243324|gb|CI244446.1|CI244446
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: TCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|87030251|gb|CI270261.1|CI270261
genomic: TCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|58598328|gb|CK008856.1|CK008856
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCEST: gi|4715480|gb|AU056597.1|AU056597
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGC
EST: GATTGNCTTCATCCTATCCTCTGTCANCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|86502892|gb|CI145525.1|CI145525
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|86522037|gb|CI162243.1|CI162243
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|27577048|gb|CA999742.1|CA999742
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|702829|gb|D49120.1|D49120
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: CGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGNATCAGCATGATCAACAACCATGAGTACAEST: gi|87021173|gb|CI271980.1|CI271980
genomic: CGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGAGCAACAACCATGAGTACAEST: gi|25803688|gb|CA759649.1|CA759649
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTGATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|29633422|gb|CB638431.1|CB638431
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|29668996|gb|CB665271.1|CB665271
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|86499292|gb|CI141925.1|CI141925
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|27554258|gb|CA998158.1|CA998158
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|88965852|gb|CI006683.1|CI006683
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|29676184|gb|CB672459.1|CB672459
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|88251143|gb|CI349373.1|CI349373
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: TCTTCGCGATTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGATTACAEST: gi|29625677|gb|CB630688.1|CB630688
genomic: TCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|86500204|gb|CI142837.1|CI142837
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|157650726|gb|EX450360.1|EX450360
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACEST: gi|29675120|gb|CB671395.1|CB671395
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTAC
EST: GATTGTTTTCATCGTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|396941381|gb|HO188590.1|HO188590
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACAEST: gi|34475487|gb|CF452785.1|CF452785
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
EST: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGG GTGTTGTTGGAACCEST: gi|88850408|gb|CI093089.1|CI093089
genomic: GATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACC
EST: TCTTACAATGG GTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
genomic: TCTTACAATGGgtaatggcca ... gtaaattcagGTGTTGTTGGAACCCAGAAGAGCATCAGCATGATCAACAACCATGAGTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCAGTCCTTGGTCCGGAAACTCGTGCACGTGCTCAAGCGAGCATCTCTGATTGTCTTCATCCTATCCTCTGTCATCTTCGCGAGTGCTCTTACAATGGgtaatggccagaacacattgactgaatgtcctttttagataacaaaccactaagtgctatgcagtctaattgaaattcagccaacaaaatcatttaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa