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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAAGACCAACAAATCTACAATCCTCTTAAGTTGCCGATGGGTTGGGACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatctcattggtttatatctaaagattatttagttcatggctgttttgctaaatcatatcttagtattaccaatgtttagagctgcaaaattcct...

Basic information

species Oryza sativa
transcript LOC_Os03g50850.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g50850.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G178227_T01 (Zea mays), 5'ss of exon 10
TGATGAAGACCAACAAATCTACAATCCTCTTAAGTTGCCGATGGGTTGGGACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaata----tctcatt--ggtttatatct----aaagattatttagttcatggctgttttgctaaatcatatcttagtattaccaatgtttagagctgcaaaattcct
||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| || ||||| ||||| ||||| ||||||| ||    ||  |||  ||  ||||| |      || || ||   |  |    |  |  |  | ||   |    ||||  ||||||| ||  |              
TGACGAAGAGCAACAAATCTACAATCCTCTCAAGTTGCCGATGGGTTGGGATGGCAAACCTATCCCCTACTGGCTGTACAAGCTACATGGCCTTGGGCAGgtaactagttgtcatatttgggagtatatttcctagtagcttgttacctctagtcttagtcagtgagatggcacggcagtagcaccaatgctttcactca----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25806388|gb|CA762349.1|CA762349
EST:     ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|58030390|gb|CX727933.1|CX727933
EST:     GCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: GCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|88966922|gb|CI379806.1|CI379806
EST:     TATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGATATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: TATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|58030389|gb|CX727932.1|CX727932
EST:     GCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: GCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|87039441|gb|CI194063.1|CI194063
EST:     ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|58683962|gb|CK072649.1|CK072649
EST:     ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|29625135|gb|CB630146.1|CB630146
EST:     ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|29664559|gb|CB660834.1|CB660834
EST:     ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|86602502|gb|CI264830.1|CI264830
EST:     ATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|29675683|gb|CB671958.1|CB671958
EST:     ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|29664555|gb|CB660830.1|CB660830
EST:     ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|88228807|gb|CI226658.1|CI226658
EST:     ATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|58674178|gb|CK062864.1|CK062864
EST:     ATAAGCTCCATGGTCTTGG-CAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|29639904|gb|CB644913.1|CB644913
EST:     ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|29629058|gb|CB634069.1|CB634069
EST:     GGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: GGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
EST: gi|86253465|gb|CI058390.1|CI058390
EST:     ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAG                         GAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT
genomic: ACGGCAAACCTATACCCTATTGGCTATATAAGCTCCATGGTCTTGGTCAGgtaaatatct ... tttttgtcagGAATTCAAATGTGAGATATGTGGAAACCACAGCTACTGGGGGCGACGGGCT