1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattctctcttttcattttattattgtttaccttattaatgttatgtgcactctattttatcataatataactattttcctacttattatctttcag
species | Oryza sativa |
transcript | LOC_Os03g49900.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATCCACCTGAGGTAGTCAGGAAAGTGCCTAAGAGGGATCTTGCAGAAGAG GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAACATGEST: gi|7378334|gb|AU088605.1|AU088605
genomic: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattct ... tatctttcagGTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAA-ATG
EST: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGTEST: gi|66912809|gb|CX099657.1|CX099657
genomic: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattct ... tatctttcagGTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGT
EST: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGTEST: gi|29659984|gb|CB656259.1|CB656259
genomic: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattct ... tatctttcagGTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGT
EST: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGTEST: gi|86851327|gb|CI312728.1|CI312728
genomic: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattct ... tatctttcagGTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGT
EST: AAGAGGGATCTTGCAGAAGAG GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGTEST: gi|29638901|gb|CB643910.1|CB643910
genomic: AAGAGGGATCTTGCAGAAGAGgttacattct ... tatctttcagGTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGT
EST: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGTEST: gi|29668947|gb|CB665222.1|CB665222
genomic: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattct ... tatctttcagGTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGT
EST: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGTEST: gi|88271704|gb|CI387757.1|CI387757
genomic: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattct ... tatctttcagGTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGT
EST: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACAAAATGTEST: gi|29658595|gb|CB654870.1|CB654870
genomic: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattct ... tatctttcagGTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGT
EST: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAG GTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGT
genomic: ATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattct ... tatctttcagGTATGGAGGCTCCAAGCAGCTTTGGGAGAGCAATCAGAAATTACCAAATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAACACATTTTGTGGCTATCCACCTGAGGTAGTCAGGAAAATGCCTAAGAGGGATCTTGCAGAAGAGgttacattctctcttttcattttattattgtttaccttattaatgttatgtgcactctattttatcataatataactattttcctacttattatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGG