1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGAGGTAGGTTCTATGTACAAGACCATTGAAGAGCTAGAGCGGAAGCTTTACCATCCTTTGTCAATCACTTTGCTTCACACACGGGAAACACTCTTGAAGgtatattttcagcattaacagtaaaaataacctgctagggtacagagcacaccatctagtatgattaaccacctattatttgtgcag
species | Oryza sativa |
transcript | LOC_Os03g49730.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACTTTGCTTCACACACGGGAAACACTCTTGAAG ATATATATGGAGTTACAAGATTGGCAGACTGCATTGATGTATTGCAGATTGEST: gi|58684796|gb|CK073483.1|CK073483
genomic: ACTTTGCTTCACACACGGGAAACACTCTTGAAGgtatattttc ... atttgtgcagATATATATGGAGTTACAAGATTGGCAGACTGCATTGATGTATTGCAGATTG
EST: ACCATCCTTTGTCAATCACTTTGCTTCACACACGGGAAACACTCTTGAAG ATATATATGGAGTTACAAGATTGGCAGACTGCATTGATGTATTGCAGATTGEST: gi|87029746|gb|CI274427.1|CI274427
genomic: ACCATCCTTTGTCAATCACTTTGCTTCACACACGGGAAACACTCTTGAAGgtatattttc ... atttgtgcagATATATATGGAGTTACAAGATTGGCAGACTGCATTGATGTATTGCAGATTG
EST: CTTTGCTTCACACACGGGAAACACTCTTGAAG ATATATATGGAGTTACAAGATTGGCAGACTGCATTGATGTATTGCAGATTGEST: gi|7332557|gb|AU085903.1|AU085903
genomic: CTTTGCTTCACACACGGGAAACACTCTTGAAGgtatattttc ... atttgtgcagATATATATGGAGTTACAAGATTGGCAGACTGCATTGATGTATTGCAGATTG
EST: ACCATCCTTTGTCAATCACTTTGCTTCACACACGGGAAACACTCTTGAAG ATATATATGGAGTTACAAGATTGGCAGACTGCATTGATGTATTGCAGATTG
genomic: ACCATCCTTTGTCAATCACTTTGCTTCACACACGGGAAACACTCTTGAAGgtatattttc ... atttgtgcagATATATATGGAGTTACAAGATTGGCAGACTGCATTGATGTATTGCAGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGTAGGTTCTATGTACAAGACCATTGAAGAGCTAGAGCGGAAGCTTTACCATCCTTTGTCAATCACTTTGCTTCACACACGGGAAACACTCTTGAAGgtatattttcagcattaacagtaaaaataacctgctagggtacagagcacaccatctagtatgattaaccacctattatttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG