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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGATCCTCTTTTTTCTATTTGAGTTCTATGATGATCAGTTGCTTGCATTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGgtactgtttccatatacatattgctggaatgctttactatttcgaggaaatactattttaatcatgtgagatttctgtgctgtgaagcgtctgtcctact...

Basic information

species Oryza sativa
transcript LOC_Os03g45770.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g45770.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM5G814310_T01 (Zea mays), 5'ss of exon 2
TTGGGATCCTCTTTTTTCTATTTGAGTTCTATGATGATCAGTTGCTTGCATTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGgtactg-tttccatatacatattgctgga---------atgctttactatttcgaggaaatactattttaatcatgtgagatttctgtgctgtgaagcgtctgtcctact
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| || |||||||| |||||||||||||| || ||| |||  |  |||| |||||         || || ||||  |     |||| ||        | | | ||  |  ||||    |  |   ||         
TTGGGATTCTCTTTTTTCTATTTGAGTTCTATGATGATCAATTGCTTGCGTTTCTTGTTTTGACTCTTGTATGGTTATGCGAGCTATTCACGATGATCAGgtaatggtttacatggaagtattactggattttttattatactctactcctgatgtgaaacacctaccctttta-gagaattcactgtttcatacaaattc---------

upper sequence: LOC_Os03g45770.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 11
TTGGGATCCTCTTTTTTCTATTTGAGTTCTATGATGATCAGTTGCTTGCATTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGgtactgtttccatatacatattgctg-gaatgctt---tactatttcgaggaaatactattttaatcatgtgagatttctgtgctgtgaagcgtctgtcctact-
|||| || || |||||||| |||||||| |||||||||||| | ||||| ||  | || |||| |||||| ||||||||||| || |||||  | ||||||| || | ||  | |   | |  ||  | |||  |   || ||| |     |   | ||| ||| | |  |   || ||||     ||||     ||    |   
TTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCCTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATCAGgt-ctctctctctctctctctctctatgtatgtatatatattatgtgagtaatcaagtatgttattaagatagcatgtctg----atgaacttgttgcttaaaaa

upper sequence: LOC_Os03g45770.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA08G19970.1 (Glycine max), 5'ss of exon 11
TTGGGATCCTCTTTTTTCTATTTGAGTTCTATGATGATCAGTTGCTTGCATTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGgtactgtttccatatac-----atattgctggaatgctttactatttcgaggaaatactattttaatcatgtgagatttctgtgctgtgaagcgtctgtcctact-
|||| || || |||||||| |||||||| |||||||||||| | ||||| ||  | || |||| |||||| ||||||||||| || |||||  | || |||| |||||||  | | |     |||||    || |  |  | ||| |     | | |  ||     ||  ||| | ||  ||       ||   | | |  ||   
TTGGCATTCTGTTTTTTCTCTTTGAGTTTTATGATGATCAGCTACTTGCTTTCATGGTCTTGATTCTTGTCTGGTTGTGTGAACTTTTTACTCTCATTAGgt-ctgtttctcttttctctcaatattatgtgagtaatcaagtatgttatttagacagcat----gtccggtgggtttgttgc-tcaaaaattatttttggtaaat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58695202|gb|CK083889.1|CK083889
EST:     TTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAG                         TGTGAGGACATCTATATCAATGCAGTTCTTCCCGCGCTTTTTCTTGCTGTA
genomic: TTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGgtactgtttc ... tcctttgcagTGTGAGGACATCTATATCAATGCAGTTCTTCCCGCGCTTTTTCTTGCTGTA
EST: gi|2443167|gb|C74938.1|C74938
EST:     TTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAG                         TGTGAGGACATCTATATCAATGCAGTTCTTCCCGCGCTTTTTCTTGCTGTA
genomic: TTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGgtactgtttc ... tcctttgcagTGTGAGGACATCTATATCAATGCAGTTCTTCCCGCGCTTTTTCTTGCTGTA
EST: gi|218491801|gb|FG954125.1|FG954125
EST:     TTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAG                         TGTGAGGACATCTATATCAATGCAGTTCTTCCCGCGCTTTTTCTTGCTGTA
genomic: TTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGgtactgtttc ... tcctttgcagTGTGAGGACATCTATATCAATGCAGTTCTTCCCGCGCTTTTTCTTGCTGTA