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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAGCGGAGATTGCTATATTGTTCTCTATACATATCATTCTGGTGACAAGAGAGAAGAATTTTATTTGACTTATTGGATTGGCAAGGACAGCATACCGgtaatgtaccttccagtgctcccaagctttagaatgtacatcctccgtttcacaatataagtcattctagcatttcccacattcgtattgatgttaatga...

Basic information

species Oryza sativa
transcript LOC_Os03g24220.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24220.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G081322_T01 (Zea mays), 5'ss of exon 11
TTACAGCGGAGATTGCTATATTGTTCTCTATACATATCATTCTGGTGACAAGAGAGAAGAATTTTATTTGACTTATTGGATTGGCAAGGACAGCATACCGgtaatgtaccttccagtgctcccaagctttagaatgtacatcctccg-tttcacaatataagtcattctagcatttcccacattcgtattgatgttaatga
 ||||||||||| |||||| |||||||||| || |||||||||| ||| || | |||||| || ||| |  ||||||||||||| ||  | ||  ||| ||| ||   ||||| | |   | || |||| |||         ||    ||||    | |   || | |    |   ||   ||| | ||   | || ||  
CTACAGCGGAGACTGCTATGTTGTTCTCTACACTTATCATTCTGCTGAAAAAAAAGAAGAGTTCTATCTAGCTTATTGGATTGGGAAAAATAGTGTACAGgtgattgtccttcaaatatacacatgcttaagatgtagtgcactgaactttcttgctttgcatcttccgtcgacccccgttattggaatgcctttttatt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58670584|gb|CK059270.1|CK059270
EST:     AGAGAGAAGAATTTTATTTGACTTATTGGATTGGCAAGGACAGCATACCG                         GAAGATCAAGAGATGGCTTTCCAAACAGCTAATTCAATTTGGAATTCACTG
genomic: AGAGAGAAGAATTTTATTTGACTTATTGGATTGGCAAGGACAGCATACCGgtaatgtacc ... tttcatacagGAAGATCAAGAGATGGCTTTCCAAACAGCTAATTCAATTTGGAATTCACTG
EST: gi|88692350|gb|CI735925.1|CI735925
EST:     GAAGAATTTTATTTGACTTATTGGATTGGCAAGGACAGCATACCG                         GAAGATCCAGAGATGGCTTNCCAAACAGCTAATTCAATTTGGAATTCACTG
genomic: GAAGAATTTTATTTGACTTATTGGATTGGCAAGGACAGCATACCGgtaatgtacc ... tttcatacagGAAGATCAAGAGATGGCTTTCCAAACAGCTAATTCAATTTGGAATTCACTG