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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGGGGTTCAGTTCGTGCAGCAATGGGACATCCAGAGCCCTTTCCGCTTTATTATATTTCAGTAGGGAATCAAGAATGCTCAAAGCCGTACTACAAAGgttttgttctctcatgtctgacatcatcagaagcgctggtttatgttttttataccgatgaaccgtgtgcctgtctcattttgtag

Basic information

species Oryza sativa
transcript LOC_Os03g20420.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g20420.2 (Oryza sativa), 5'ss of exon 11
lower sequence: AT5G26120.1 (Arabidopsis thaliana), 5'ss of exon 11
ACATGGGGTTCAGTTCGTGCAGCAATGGGACATCCAGAGCCCTTTCCGCTTTATTATATTTCAGTAGGGAATCAAGAATGCTCAAAGCCGTACTACAAAGgttttg------ttctctcatgtctgacatcatc---agaagcgctggtttatgttttttataccgatgaaccgtgtgcctgtctcattttgtag
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ACATGGGGATCGGTTCGAGCTGCAATGGGACATCCAGAGCCTTTTGAACTGAAATATGTTGCGGTTGGGAATGAAGATTGTTTTAAGAGTTACTACAGAGgtttttgcatttctctctgttatttaaaaccattttgaaagatacaaacaagagagctttggttatactaact-taaatacacaactttttacag