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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATCTTTTTGGAAACAATATGTAATGACCAAAATGTTCTCGAGAGAAATATGCGCTTGAAAGTTCAACGAAGTCCTGATTATGCGGAACAgtgagatgtcttactttgttgtgtatatcttcatcaatataatttggatttgattcctgttgtttctttgttacag

Basic information

species Oryza sativa
transcript LOC_Os03g18310.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18310.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 10
ATCATCTTTTTGGAAACAATATGTAATGACCAAAATGTTCTCGAGAGAAATATGCGCTTGAAAGTTCAACGAAGTCCTGATTATGCGGAACAgtgagatgtcttactttgttgtgtatatcttcatcaatataatttggatttgattcctgttgt-ttctttgttacag
|||||||||||||||||| |||||||||||||| ||||||| ||||||||||| || ||||||||||||| ||||||||||||||| || |||| |||         ||    ||  ||| | ||||    |  |    | ||  |  |  |  | |||| ||||||||
ATCATCTTTTTGGAAACATTATGTAATGACCAAGATGTTCTTGAGAGAAATATACGATTGAAAGTTCAACAAAGTCCTGATTATGCAGAGCAgtaagaaaaaaattatttgcttgcctatttgcatcccggtggtgcacaatttttctcaatcatcttctatgttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689570|gb|CK078257.1|CK078257
EST:     GAGAGAAATATGCGCTTGAAAGTTCAACGAAGTCCTGATTATGCGGAACA                         GACAGATTTTGAAGCTGGTGTTCGAGATTTCAAAGAGAGATTGGCCTATTA
genomic: GAGAGAAATATGCGCTTGAAAGTTCAACGAAGTCCTGATTATGCGGAACAgtgagatgtc ... tttgttacagGACAGATTTTGAAGCTGGTGTTCGAGATTTCAAAGAGAGATTGGCCTATTA