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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAAGGTTGTCCAACGCCACTTTCATGATCTTTCACAAAGATATGGGGACACAGTTGTTGTTGATTTGACAGATAAGgtaagtcctgtgctcatgttgatgttgaaatattagtttatctaatatagtaataactgaacactgtaatgcaactgtgaagtttatcaaacttagttgt...

Basic information

species Oryza sativa
transcript LOC_Os03g18080.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G047894_T02 (Zea mays), 5'ss of exon 11
CCGAAGGTTGTCCAACGCCACTTTCATGATCTTTCACAAAGATATGGGGACACAGTTGTTGTTGATTTGACAGATAAGgtaagtcctgtgctcatgttgatgttgaaatattagtttatctaatatagtaataactgaacac-tgtaatgcaactgtgaagtttatcaaacttagttgt--
|  |||||||| ||||||||||||||||||||||||||| |||||||  | | | |||||| ||| ||||| ||||| ||||||  | |   |||  ||||||  | |||    |||   |||     |  |   |  |||| | |   |    | |     || |   |   ||      
CATAAGGTTGTTCAACGCCACTTTCATGATCTTTCACAACGATATGGCAAGATAATTGTTGCTGACTTGACTGATAAAgtaagttttatatacat--tgatgt-aacataccttttttattaagcagatggttgttacacacatatttggtgtttttctttcttttttgataaaggcaaag

upper sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 11
lower sequence: Vv08s0105g00480.t01 (Vitis vinifera), 5'ss of exon 11
CCGAAGGTTGTCCAACGCCACTTTCATGATCTTTCACAAAGATATGGGGACACAGTTGTTGTTGATTTGACAGATAAGgtaag------tcctgtgctcatgttgatgttgaaatattagtttatctaat-atagtaataactgaacactgtaatgcaactgtgaagtttatcaaacttagttgt
 |  | |||||  | || || |||||||||||||||||||||||||| ||    || | ||| ||  | || ||||| |||||      | || ||||    || |   || |  || ||  |  |  || ||| | ||| ||     || |        || ||||   |  | |  |||    
TCAGAAGTTGTTGAGCGTCATTTTCATGATCTTTCACAAAGATATGGAGAGGTTGTAGCTGTGGACCTAACTGATAAAgtaagagtttcttctctgctttctttcactctgtagcataagcctggcatatgatattcatatct--tttctattggctgtttgagaag---acaagatctagcc--