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TGACTGTGTTATTGCTCTGGCTAGTGGGTTATCTGGTTTATCCAGTATCCTTACTCATGATAGCACTGAAGCTCAACAGTTCCAAGCATGCTTAGATGCTgtaagttttacttcccccaagcttttccttttcatgtgactccaggctccatgttcttgtctccatatttattttgaaatgcacttttctgtagacttat...
species | Oryza sativa |
transcript | LOC_Os03g17120.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTACTCATGATAGCACTGAAGCTCAACAGTTCCAAGCATGCTTAGATGCT GTAATGCAAGGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACAEST: gi|218494800|gb|FG943469.1|FG943469
genomic: TTACTCATGATAGCACTGAAGCTCAACAGTTCCAAGCATGCTTAGATGCTgtaagtttta ... tctcctgtagGTAATGCAAGGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACA
EST: TACTCAAGATAGCACTGAAGCTCAACAGTTCCAAGCATAGCTTAGATGCT GTAATACAAGGTCTTGCAAAATCCATAGCATGGGATEST: gi|29613227|gb|CB618240.1|CB618240
genomic: TACTCATGATAGCACTGAAGCTCAACAGTTCCAAGCAT-GCTTAGATGCTgtaagtttta ... tctcctgtagGTAATGCAAGGTCTTGCAAAATCCATAGCATGGGAT
EST: TTACTCATGATAGCACTGAAGCTCAACAGTTCCAAGCATGCTTAGATGCT GTAATGCAAGGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACAEST: gi|29670993|gb|CB667268.1|CB667268
genomic: TTACTCATGATAGCACTGAAGCTCAACAGTTCCAAGCATGCTTAGATGCTgtaagtttta ... tctcctgtagGTAATGCAAGGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACA
EST: TTACTCATGATAGCACTGAAGCTCAACAGTTCCAAGCATGCTTAGATGCT GTAATGCAAGGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACA
genomic: TTACTCATGATAGCACTGAAGCTCAACAGTTCCAAGCATGCTTAGATGCTgtaagtttta ... tctcctgtagGTAATGCAAGGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACTGTGTTATTGCTCTGGCTAGTGGGTTATCTGGTTTATCCAGTATCCTTACTCATGATAGCACTGAAGCTCAACAGTTCCAAGCATGCTTAGATGCTgtaagttttacttcccccaagcttttccttttcatgtgactccaggctccatgttcttgtctccatatttattttgaaatgcacttttctgtagacttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA