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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGAAGCGAGAAGGTTCAAATAATTCAGCTAGCAGCTCTCCCGATAGTGACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttccatttattgatccaacctagaataataaacatttttttatacatagtattgttaatttatgacttatttggtgttgcag

Basic information

species Oryza sativa
transcript LOC_Os03g13790.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13790.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G152319_T02 (Zea mays), 5'ss of exon 12
---TAGGAAGCGAGAAGGTTCAAATAATTCAGCTAGCAGCTCTCCCGATAGTGACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttc-catttattgatccaacctagaat---aataa----acatttttttatacatagtattgttaatttatgacttatttggtgttgcag
    ||||||| |||||| ||||| | |||   |||||||||||| |||| ||||| ||| |||||||||||||| |||||||| |||| | ||||||||||||| || |  ||| | |||      |||||||    |||||    | |  |||   |   |    ||||| |||||||  ||||||  |||   ||
CTCCAGGAAGCAAGAAGGGTCAAACACTTC---TAGCAGCTCTCCTGATACTGACAATGAAGTTCATCCTTCAAATTCAGAAGGATTTCGAGGTTTTCTTCAGgtctgctgacatcttttgtgttctcctagaaccaaaataagtttatacgtttgagttgttgaccttgtttatttatgtattatttaatgtattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88728664|gb|CI752174.1|CI752174
EST:     ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|29617185|gb|CB622197.1|CB622197
EST:     ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|86592896|gb|CI270453.1|CI270453
EST:     CAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: CAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|29618832|gb|CB623844.1|CB623844
EST:     ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|29621696|gb|CB626707.1|CB626707
EST:     ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|15854139|gb|BI806935.1|BI806935
EST:     CATCCTTC-AACTCAGAAGGG-TTCAAT-TTTTCTTCAG                         GACTTAGCTGGA-CGGC-GTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: CATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|87022124|gb|CI259196.1|CI259196
EST:     ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|29621640|gb|CB626651.1|CB626651
EST:     ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|87014871|gb|CI271470.1|CI271470
EST:     ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|86477380|gb|CI120013.1|CI120013
EST:     ACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGACCGCCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|29626961|gb|CB631972.1|CB631972
EST:     ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|29626892|gb|CB631903.1|CB631903
EST:     ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|29644351|gb|CB649358.1|CB649358
EST:     ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: ACAGTGATGTTCATCCTTCAAACTCAGAAGGGTTTCAATGTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
EST: gi|86482080|gb|CI124713.1|CI124713
EST:     GTTTTCTTCAG                         GACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA
genomic: GTTTTCTTCAGgtttgttcca ... ggtgttgcagGACTTAGCTGGAGCGGCGGTTGCTCATAATCCTTGTATTGACGATGCCAAA