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TTTAGATTCACTGGTCGAGAAGTTTCTTACAGCTGAACCAACCGAAGGGGAAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttcaaagctacatggcagttctctttaaagtatcttccatattaagttacccatcttgaagtttttagctcaggagcattaaaactgcaaatt...
species | Oryza sativa |
transcript | LOC_Os03g11200.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGCTGACAAGGAAGACATATCTTCCATATTTTTAGAG TTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGEST: gi|29628808|gb|CB633819.1|CB633819
genomic: AGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttc ... ttctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
EST: AGCTGACAAGGAAGACATATCTTCCATATTTTTAGAG TTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGEST: gi|58592425|gb|CF990733.1|CF990733
genomic: AGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttc ... ttctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
EST: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAG TTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGEST: gi|218489463|gb|FG957652.1|FG957652
genomic: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttc ... ttctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
EST: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAG TTATAGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGGEST: gi|29625008|gb|CB630019.1|CB630019
genomic: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttc ... ttctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
EST: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAG TTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
genomic: AAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttc ... ttctctacagTTTTTGGATCTATTTGGGGATGCACAAGCGATCAAGAAGGCTACCAATCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAGATTCACTGGTCGAGAAGTTTCTTACAGCTGAACCAACCGAAGGGGAAGTCACAAGTCTAGCTGACAAGGAAGACATATCTTCCATATTTTTAGAGgtaattcttcaaagctacatggcagttctctttaaagtatcttccatattaagttacccatcttgaagtttttagctcaggagcattaaaactgcaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA