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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGACACTGCGCTTCCTTCACCTGAATGGTCATCAGATCATATAGCACTCTTAGCAGAATTTCGGTGCAAGCCTAGAGTTAGACGATGATACCCTAGgtatgagcaaagtactaaaatcattgattagttataccattgatttggttggaattacccatgttctttagataatagaacgccccatcaatattccttg...

Basic information

species Oryza sativa
transcript LOC_Os03g07080.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g07080.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G124051_T01 (Zea mays), 5'ss of exon 12
GGAAAGACACTGCGCTTCCTTCACCTGAATGGTCATCAGATCATATAGCACTCTTAGCAGAATTTCGGTGCAAGCCTAGAGTTAGACGATGATACCCTAGgtatgagcaaagtactaaaatcattgattagtta-taccattga-tttggttggaattacccatgttc----tttagataatagaacgccccatcaatattccttg
| |||||||| || |||||||| |||||||||||||| ||||||||||| ||| |||||||||| |||||||||| |||||||||||||||||||  |||||||| | | | || ||  || | | |||   || | || | || |||  ||    |  ||||||||     | |   ||   | | | |    |   ||      
GAAAAGACACGGCTCTTCCTTCTCCTGAATGGTCATCGGATCATATAGCGCTCCTAGCAGAATTCCGGTGCAAGCTTAGAGTTAGACGATGATACTTTAGgtatggggagaatattactattactcattcaatactgccttcgactttacttcctgtcccccatgttaatggtctttgtaggggtaagtcttgcctcgat------

upper sequence: LOC_Os03g07080.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA03G36550.1 (Glycine max), 5'ss of exon 11
GGAAAGACACTGCGCTTCCTTCACCTGAATGGTCATCAGATCATATAGCACTCTTAGCAGAATTTCGGTGC---AAGCCTAGAGTTAGACGATGATACCCTAGgtatgagcaaag-tactaaaatcattgattagttataccattgatttggttggaat-tacccatgttctttagataatagaacgccccatcaatattccttg
   ||||||| || |||||||| ||||||||||| || |||||||||||  | ||||| || || || |||   |||  ||||  ||| || |||      |||||  | ||    |        | ||||| | ||||    || || |  ||    | | |   |||| | |     ||      | || |  || ||| || 
---AAGACACAGCACTTCCTTCTCCTGAATGGTCCTCTGATCATATAGCTATGTTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGTTGACTTATAAGgtaccatcatgtctgtcctttcccttgatcaattat-tatttaatattcttattttatgcttgtgttgtgtgttagatcagcgactccttgcattttcatt-

upper sequence: LOC_Os03g07080.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA02G26620.2 (Glycine max), 5'ss of exon 11
GGAAAGACACTGCGCTTCCTTCACCTGAATGGTCATCAGATCATATAGCACTCTTAGCAGAATTTCGGTGC---AAGCCTAGAGTTAGACGATGATACCCTAGgtatgagcaaagtactaaaatcattgattagttataccattgatttggttggaattacccatgttctttag-ataatagaacgccccatcaatattccttg--
   | ||||| || |||||||||||||||||||| |||||||| ||||| |||||||| |||||||| |||   |||  || |  ||| || ||| |    |||||   |||   | || ||  |    |      |||    |  ||||      ||||          | |    ||  ||||   |  |   |  |  ||   
---AGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACATAGCTCTCTTAGCCGAATTTCGCTGCTGCAAGAATAAATCTAGGCGTTGACAGTTAAGgta--ggcaccatcctcaacccccccacccac-atatagcttgtttgagaattattattggaaaagatcaacggaagtgaactttcttttggtgctggttcct

upper sequence: LOC_Os03g07080.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA09G15980.2 (Glycine max), 5'ss of exon 11
GGAAAGACACTGCGCTTCCTTCACCTGAATGGTCATCAGATCATATAGCACTCTTAGCAGAATTTCGGTGC---AAGCCTAGAGTTAGACGATGATACCCTAGgtatgagcaaagtactaaaatcattgattagttataccattgatttgg--ttggaattacccatgttctttag--ataatagaacgccccatcaatattccttg
   | ||||| || |||||||||||||||||||| |||||||| || || |||||||| || ||||| |||   |||  || |  ||| || ||| |    |||||   |||   | || ||  |       |  |||| | ||| ||     ||   |||    | | ||    |   |  |    |      |    ||||||| 
---AGGACACAGCACTTCCTTCACCTGAATGGTCCTCAGATCACATTGCTCTCTTAGCTGAGTTTCGCTGCTGCAAGAATAAATCTAGGCGTTGACAGTTAAGgta--ggcaccatcctcaaccccccacccacatatagc-ttgtttgaaaattattattggaaaagatcaacggcagtggtctttcttttggtgctgattcctt-

upper sequence: LOC_Os03g07080.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA19G39210.3 (Glycine max), 5'ss of exon 11
GGAAAGACACTGCGCTTCCTTCACCTGAATGGTCATCAGATCATATAGCACTCTTAGCAGAATTTCGGTGC---AAGCCTAGAGTTAGACGATGATACCCTAGgtatgagca-----aagtactaaaatcattgatta--gttataccattgatttggttggaattacccatgttctttagataatagaacgccccatcaatattccttg
   ||||||| || |||||||| ||||||||||| || ||||||||||| || ||||| || || || |||   |||  ||||  ||| || |||  |   |||||  | ||           |    | ||  ||||   || ||   || |||||  || | |      |||| | | || |    || || |  |    |||     
---AAGACACAGCACTTCCTTCTCCTGAATGGTCCTCTGATCATATAGCTCTGTTAGCTGAGTTCCGCTGCTGCAAGAATAGATCTAGGCGCTGACTCATAAGgtaccatcatctctgtcctttccctttatcaattattattttatgcttaatttgtgtg-agtggttattgttttatggaaagatcaaggctc--ttggcattt----