1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAgtaagttattcctcgatggcttttgtttcaataactattagcttttgccctagcttgttcaatttattttttcattctgggcataccattcaaagttgtt...
species | Oryza sativa |
transcript | LOC_Os03g06410.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAA GTGTGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAGEST: gi|86482006|gb|CI124639.1|CI124639
genomic: CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAgtaagttatt ... atttctgcagGTGTGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAG
EST: CCGGAGTGGATGGCACCTGAGTTCTTGCGGAATGAACAATCAAATGAAAA GTGTGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAGEST: gi|25803481|gb|CA759450.1|CA759450
genomic: CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAgtaagttatt ... atttctgcagGTGTGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAG
EST: CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAA GTGCGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAGEST: gi|86437095|gb|CI118817.1|CI118817
genomic: CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAgtaagttatt ... atttctgcagGTGTGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAG
EST: CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAA GTGTGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAG
genomic: CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAgtaagttatt ... atttctgcagGTGTGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAgtaagttattcctcgatggcttttgtttcaataactattagcttttgccctagcttgttcaatttattttttcattctgggcataccattcaaagttgtt
- - AGTGGA