1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAgtaagattccgccttttccatcaaaaactccttttccatcaaaaactcttgctactagttcttaactttgatgtgaaatccctcttctgctag
species | Oryza sativa |
transcript | LOC_Os03g05720.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATGCCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA GAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAGEST: gi|29634108|gb|CB639117.1|CB639117
genomic: ATGC-AAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAgtaagattcc ... cttctgctagGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAG
EST: AATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA GAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAGEST: gi|7332525|gb|AU085871.1|AU085871
genomic: AATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAgtaagattcc ... cttctgctagGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAG
EST: AATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA GAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAGEST: gi|218478499|gb|FG957068.1|FG957068
genomic: AATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAgtaagattcc ... cttctgctagGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAG
EST: AATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA GAATTGTTGGCCATGAGATCAGATGEST: gi|33803449|gb|CF327599.1|CF327599
genomic: AATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAgtaagattcc ... cttctgctagGAATTGTTGGCCATGAGATCAGATG
EST: AATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA GAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAGEST: gi|218482633|gb|FG949654.1|FG949654
genomic: AATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAgtaagattcc ... cttctgctagGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAG
EST: AATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAA GAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAG
genomic: AATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAgtaagattcc ... cttctgctagGAATTGTTGGCCATGAGATCAGATGCTCCCTTCCGAGATGCAAGAGCGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGCAAGGATGCTATAGGTTTCAACCTTGCTGCAATGGATCATATAAAAgtaagattccgccttttccatcaaaaactccttttccatcaaaaactcttgctactagttcttaactttgatgtgaaatccctcttctgctag
- - - AGGATG
- - - - - - - - - - - - - - TGCTGC