1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCGTTATTCTTCAAGATTTCAAATGGCATGATTTCCTGCTCAAGCTTCATAGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggactccgctaatgaatcttagtgttgctctacttactttaaacaatgctgagttaagggttgtacttctggttggtttcatccaataaccctt...
species | Oryza sativa |
transcript | LOC_Os03g03400.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG AEST: gi|29641176|gb|CB646183.1|CB646183
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcag-
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG AEST: gi|29641176|gb|CB646183.1|CB646183
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcag-
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG AEST: gi|88296098|gb|CI535261.1|CI535261
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcag-
EST: ATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGAGTTCAGEST: gi|88461037|gb|CI550200.1|CI550200
genomic: ATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGAT---A----AGgtaaggggac ... caga
EST: CTATCAGTGACTGGTGTGTCATCGATAAGAGTTCAGEST: gi|88283059|gb|CI404505.1|CI404505
genomic: CTATCAGTGACTGGTGTGTCATCGAT---A----AGgtaaggggac ... caga
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG TCGATTGAAGTAGCAGAAAAGGAAGTTAGTGCTGACATCTTTGTGCAATCTEST: gi|88466576|gb|CI532383.1|CI532383
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcagTCGATTGAAGTAGCAGAAAAGGAAGTTAGTGCTGACATCTTTGTGCAATCT
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGAGTTCAGEST: gi|29641406|gb|CB646413.1|CB646413
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGAT---A----AGgtaaggggac ... caga
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG AEST: gi|29641406|gb|CB646413.1|CB646413
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcag-
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG AEST: gi|29641406|gb|CB646413.1|CB646413
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcag-
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG AEST: gi|88832770|gb|CI369660.1|CI369660
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcag-
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGAGTTCAGEST: gi|29641179|gb|CB646186.1|CB646186
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGAT---A----AGgtaaggggac ... caga
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG AEST: gi|29641179|gb|CB646186.1|CB646186
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcag-
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG AEST: gi|29641179|gb|CB646186.1|CB646186
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcag-
EST: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG AEST: gi|88473814|gb|CI411085.1|CI411085
genomic: AGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcag-
EST: ATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAG TCGATTGAAGTACCAGAAAAGGAANTTAGTNCTGACATCTTTGTGCAATCT
genomic: ATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggac ... cagagttcagTCGATTGAAGTAGCAGAAAAGGAAGTTAGTGCTGACATCTTTGTGCAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGTTATTCTTCAAGATTTCAAATGGCATGATTTCCTGCTCAAGCTTCATAGATTGTATGGAGGAACTCATCTATCAGTGACTGGTGTGTCATCGATAAGgtaaggggactccgctaatgaatcttagtgttgctctacttactttaaacaatgctgagttaagggttgtacttctggttggtttcatccaataaccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA