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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGAGCAACCGGTAGGGGTTTTGTGGTACGACATATCAAATTTGCTGAAAACTACCGTCTTTATTCCAGGAGCCATTTTGTGAAAGGgtttgttatcacctgattttgctctcaaaattgtgtgcaactacagtctgtgatgattgcttttgtttttcacag

Basic information

species Oryza sativa
transcript LOC_Os03g02756.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02756.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G453794_T01 (Zea mays), 5'ss of exon 10
TATAGAGCAACCGGTAGGGGTTTTGTGGTACGACATATCAAATTTGCTGAAAACTACCGTCTTTATTCCAGGAGCCATTTTGTGAAAGGgtttgttatcacctgattttgctctca-------aaattgtgtgcaactaca--gtctgtgatgattgcttttgtttttcacag
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||||  | |||||||||||||||||||||||||| || |||   |  | |||       ||||| | |   || | |   | |||| ||||||   ||| ||||   ||
TATAGAGCAACCGGTAGAGGTTTTGTGGTACGACATATCAAGTTTGCTGAGAACTACCGTATTTATTCTCGAAGCCATTTTGTGAAAGGgtttgttattacgtgaagctattttcacttgtggaaattttctattacaatatcatttgtgttgattgtgcttggtttttgtag

upper sequence: LOC_Os03g02756.2 (Oryza sativa), 5'ss of exon 11
lower sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 44
TATAGAGCAACCGGTAGGGGTTTTGTGGTACGACATATCAAATTTGCTGAAAACTACCGTCTTTATTCCAGGAGCCATTTTGTGAAAGGgtttgttatcacctgattttgctctcaaaattgtgtgcaactacagtctgtgatgattgcttttgtttttcacag---------------------------------------
||   ||| || || || || || || ||    |||||||||||| ||||||||||||||||||||||||| || |||||||| |||| |  |  | ||  ||  ||| | ||| |    | |      ||   || |       | ||  | ||     |  |                                       
TACCAAGCCACTGGAAGAGGCTTCGTCGTGAAGCATATCAAATTTTCTGAAAACTACCGTCTTTATTCCAGAAGTCATTTTGTCAAAGCg--taatctcctcttctttagttcttatgtatatacatttctgatgtatacctgtttagccatagtaaaggattgaaaattcattgatatgctacttctttttcgtttctctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29613902|gb|CB618915.1|CB618915
EST:     AAATTTGCTGAAAACTACCGTCTTTATTCCAGGAGCCATTTTGTGAAAGG                         GTTGGAGGTTGCTCTTTTGTTAGTGATCTTTTTAGCGTATGGTTTTAACAA
genomic: AAATTTGCTGAAAACTACCGTCTTTATTCCAGGAGCCATTTTGTGAAAGGgtttgttatc ... tttttcacagGTTGGAGGTTGCTCTTTTGTTAGTGATCTTTTTAGCGTATGGTTTTAACAA