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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGTGACTCTCATTGGGTTTTCACTAGGTGCACGTGTTATATTTAAGTGTTTACAGGAACTTGCTTTATCGAGTGATAATGgtacctgttctgtaaccatctccttcatccataagattttcctttcttggtggcaaattatcagttttaaccatctccatctcttgtttgcaaccag

Basic information

species Oryza sativa
transcript LOC_Os03g02170.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02170.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G092776_T03 (Zea mays), 5'ss of exon 13
GCCTGTGACTCTCATTGGGTTTTCACTAGGTGCACGTGTTATATTTAAGTGTTTACAGGAACTTGCTTTATCGAGTGATAATGgtacctgttctgtaaccatct---ccttcatc-cataagattttcctttcttggtggcaaattatcagttttaaccatctccatctcttgtttgcaaccag
||||||||||||  ||||||| || || || || || || ||||| ||||| |||||||| || |||||||| || || ||||||| ||||||| ||   ||     |||  ||  |||| || ||| || |  || | | |    || |||                                
GCCTGTGACTCTTGTTGGGTTCTCGCTTGGAGCGCGAGTCATATTCAAGTGCTTACAGGAGCTAGCTTTATCAAGCGACAATGgtatctgttctttagttatagtaacctaaatttcatatgactttgctcttatgcttg-atggaatgagtcag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88227944|gb|CI227424.1|CI227424
EST:     TATTTAAGTGTTTACAGGAACTTGCTTTATCGAGTGATAATG                         AGGGACTTGTTGAGAGGGTGGTTCTTCTTGGTGCTCCAGTTTCTGTGAAAG
genomic: TATTTAAGTGTTTACAGGAACTTGCTTTATCGAGTGATAATGgtacctgttc ... ttgcaaccagAGGGACTTGTTGAGAGGGTGGTTCTTCTTGGTGCTCCAGTTTCTGTGAAAG