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TTACCAAACAAGATGAAGGATTTGTTTCTGGTATTCGTGGAGTAGAATGGGATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAAgtaagatggatctgtatcattttgtttttttaacttgtagccttgaacctgtttgttaaacagttgttttgttggtgccag
species | Oryza sativa |
transcript | LOC_Os02g58340.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAA GAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCCEST: gi|29628315|gb|CB633326.1|CB633326
genomic: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAAgtaagatgga ... ttggtgccagGAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCC
EST: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAA GAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCCEST: gi|29629259|gb|CB634270.1|CB634270
genomic: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAAgtaagatgga ... ttggtgccagGAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCC
EST: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAA GAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCCEST: gi|58676094|gb|CK064781.1|CK064781
genomic: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAAgtaagatgga ... ttggtgccagGAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCC
EST: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAA GAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAAEST: gi|58587575|gb|CF985883.1|CF985883
genomic: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAAgtaagatgga ... ttggtgccagGAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAA
EST: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAA GAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCCEST: gi|27577497|gb|CB000192.1|CB000192
genomic: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAAgtaagatgga ... ttggtgccagGAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCC
EST: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAA GAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCCEST: gi|38471500|gb|CF955631.1|CF955631
genomic: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAAgtaagatgga ... ttggtgccagGAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCC
EST: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAA GAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCCEST: gi|9864982|gb|AU100732.1|AU100732
genomic: GATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAAgtaagatgga ... ttggtgccagGAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCC
EST: TGGTGCTACCACAA GAATACNCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCC
genomic: TGGTGCTACCACAAgtaagatgga ... ttggtgccagGAATACTCTTTTGAGCATTGCAAAGCATTATGAAACAGGCGAACTTCTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACCAAACAAGATGAAGGATTTGTTTCTGGTATTCGTGGAGTAGAATGGGATGCTGTAGAGCTGCCCTCTCAGTTCATGGAGAACTGGTGCTACCACAAgtaagatggatctgtatcattttgtttttttaacttgtagccttgaacctgtttgttaaacagttgttttgttggtgccag
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA