1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTGTTAAGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAGgtaaaccagtgagcttaatgaagttcgataaattcattctggttatgatgtgattctcattttattggttgtgatgctatctgggtctag
species | Oryza sativa |
transcript | LOC_Os02g48110.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAG GTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCEST: gi|27576359|gb|CA999053.1|CA999053
genomic: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAGgtaaaccagt ... ctgggtctagGTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCC
EST: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAG GTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCEST: gi|29673173|gb|CB669448.1|CB669448
genomic: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAGgtaaaccagt ... ctgggtctagGTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCC
EST: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAG GTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCEST: gi|66914322|gb|CX101170.1|CX101170
genomic: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAGgtaaaccagt ... ctgggtctagGTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCC
EST: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAG GTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCEST: gi|29673174|gb|CB669449.1|CB669449
genomic: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAGgtaaaccagt ... ctgggtctagGTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCC
EST: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAG GTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCCEST: gi|33793770|gb|CF322769.1|CF322769
genomic: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAGgtaaaccagt ... ctgggtctagGTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGAGAAGGAAGCC
EST: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAG GGTTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGGGAGAAGGAAG
genomic: AGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAGgtaaaccagt ... ctgggtctagG-TTGTAAGTGAAGCAGAGAAAGTAAAAACTTGGTTGGAGG-AGAAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTTAAGAACTGGGACTCGAACAAACCGTGGCTTCCAAAAAAGAGGGTAGATGAGgtaaaccagtgagcttaatgaagttcgataaattcattctggttatgatgtgattctcattttattggttgtgatgctatctgggtctag
- - - - - - - - - - - - - - - - - - - - - AAGAGG