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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGATAATAGCTGTGCCGGCCTTCAGTACCCTAAGATGAAACTTTTGTCTCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttccttgaacaatatagtacttctagagaaaagtgttgtaccaacacaacttgtgttatcactgttaagtgttgattttactaatcctgtttcttgtgctttacag

Basic information

species Oryza sativa
transcript LOC_Os02g47850.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47850.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G147450_T03 (Zea mays), 5'ss of exon 11
AACGATAATAGCTGTGCCGGCCTTCAGTACCCTAAGATGAAACTTTTGTCTCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttccttgaacaatatagtacttctagagaaaagtgttgtaccaacacaacttgtgttatcactgttaagt-gttgattttactaatcctgtttcttgtgctttacag
||||| ||||| ||||| |||||||||||| | |||||||| ||| ||||||| ||||||||||| ||||| || || || ||||||||||| |||   ||||||||| |||   | | |   | ||  |     |   || ||||  |||  |   ||   | | | ||| |  | | |||| |  | | ||  || | |||||||||||||
AACGACAATAGTTGTGCTGGCCTTCAGTACGCCAAGATGAAGCTTGTGTCTCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttcttttgctagaatcttctgttgatccaccatggtgtag-aacgta--ctgctatcttaatgtgatttagctgatgtctcgattc--gtcttttgtgctttacag

upper sequence: LOC_Os02g47850.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G029573_T01 (Zea mays), 5'ss of exon 10
AACGATAATAGCTGTGCCGGCCTTCAGTACCCTAAGATGAAACTTTTGTCTCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttccttgaacaatatagtacttctagagaaaagtgttgtaccaacaca-acttgtgttatcactgttaagtgttgattttactaatcctgtttcttgtgctttacag
||||||||||| || || ||||| |||||| | |||||||| ||| ||||||| ||||||||||| ||||| || || || |||||||| || |||   ||||| |||| |  |  |  ||    |||||| |||       || |  |  ||   ||||   | | | ||| |  |      | ||   || |  | | ||||| |||||||
AACGATAATAGTTGCGCTGGCCTCCAGTACTCCAAGATGAAGCTTATGTCTCTCCAGTACCATCCCGAGTCTTCCCCTGGTCCGCATGACTCCGACACAGgtacgtttcttgtactagaat----cttctatagatccaccatggagtacaacgtgcttgctatcttaatgtgatttagctgatgtatcgattc-atgttttgtgttttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89176288|gb|CI043309.1|CI043309
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88365911|gb|CI545770.1|CI545770
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88385064|gb|CI561720.1|CI561720
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|58661834|gb|CK050514.1|CK050514
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|25803551|gb|CA759512.1|CA759512
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86880519|gb|CI321005.1|CI321005
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGGAG-TGATGAAGAACAACAGATTGTGAGGCGCA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATA-GAGATGATGAAGAACAACAGATTGTGAGGCGCA
EST: gi|88468047|gb|CI517506.1|CI517506
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88274055|gb|CI394461.1|CI394461
EST:     CCATCCAGAGTCCTCACCCGGGCCGCATGATTCTTACTTGG                         CTTTT-GTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: CCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88266357|gb|CI377259.1|CI377259
EST:     TCTTCACTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88268554|gb|CI378489.1|CI378489
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTGTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGGCA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGC-GCA
EST: gi|88975276|gb|CI023527.1|CI023527
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88975138|gb|CI023389.1|CI023389
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88322108|gb|CI537691.1|CI537691
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGNCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88232225|gb|CI230683.1|CI230683
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|86482764|gb|CI125397.1|CI125397
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
EST: gi|88250235|gb|CI348465.1|CI348465
EST:     TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGG                         CTTTTGGTTAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA
genomic: TCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttcc ... tgctttacagCTTTTGGTGAATTTATAGAGATGATGAAGAACAACAGATTGTGAGGCGCAA