1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGAGTATGGTCTTAATCAGCGCATAGGTCCGATATCGGTGGCAACATTGTCAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAGgtctgtctcaaaatgtccctactcctttacttgaattttttatttggaatttggacattttcgcgggtacttttttttttaactttttagaaagtcaagt...
species | Oryza sativa |
transcript | LOC_Os02g43350.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAG GGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCAEST: gi|29674692|gb|CB670967.1|CB670967
genomic: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAGgtctgtctca ... ctaatgacagGGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCA
EST: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAG GGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCAEST: gi|29687897|gb|CB684172.1|CB684172
genomic: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAGgtctgtctca ... ctaatgacagGGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCA
EST: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAG GGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCAEST: gi|29630419|gb|CB635428.1|CB635428
genomic: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAGgtctgtctca ... ctaatgacagGGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCA
EST: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAG GGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCAEST: gi|86827098|gb|CI270817.1|CI270817
genomic: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAGgtctgtctca ... ctaatgacagGGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCA
EST: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAG GGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCAEST: gi|86436764|gb|CI118486.1|CI118486
genomic: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAGgtctgtctca ... ctaatgacagGGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCA
EST: AGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAG GGCCATGTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCAEST: gi|29625158|gb|CB630169.1|CB630169
genomic: AGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAGgtctgtctca ... ctaatgacagGGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCA
EST: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAG GGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCAEST: gi|29630417|gb|CB635426.1|CB635426
genomic: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAGgtctgtctca ... ctaatgacagGGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCA
EST: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAG GGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCA
genomic: CAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAGgtctgtctca ... ctaatgacagGGCCATCTAGTTGACCTTGTCCAGCGGGAAGTAAAAGCCCTTCTTCAATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGTATGGTCTTAATCAGCGCATAGGTCCGATATCGGTGGCAACATTGTCAAATGGTGGGCTAGATGAATCCGGAGGCTCTCCATGGGGAAGGGATCAGgtctgtctcaaaatgtccctactcctttacttgaattttttatttggaatttggacattttcgcgggtacttttttttttaactttttagaaagtcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG