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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAGgtttgtgaagttcactgccgtgtgcttttacagaaatatacatgactttaacttgagaattcttggcagttgacaccaaag

Basic information

species Oryza sativa
transcript LOC_Os02g31874.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G144254_T04 (Zea mays), 5'ss of exon 8
GTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAGgtttgtgaa--gttcactgccgtgtgcttttacagaaatatacatgactttaacttgagaattcttggcagttgacaccaaag
||||||||||| || |||||| | ||| |||||||||||||||||| ||||||| | || |||||||| || |||||||| |||| ||||||||||| ||  ||| | |  | |||||||| ||| | |      ||||| |   | || |||| |   |||            
GTATTTGATACGCTCAGGATAATTATGGTTGTATTGGGCATGACATTTGTCTTTGTTGGGATCTCCTTGCTAGCACCCGATGACACTAAAGgtttgtaaaaggttgattttcatgtgctttcacacagaagattttgactct---tggacaattgtcaccag------------

upper sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 11
GTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAGgtttgtgaa--gttcactgccgtgtgcttttacagaaatatacatgactttaacttgagaattcttggcagttgacaccaaag
||||||||||| || |||||| | |||||||| || |||||||||| ||||||| | || || ||||| || |||||||| ||||||||||||| || ||  ||| | |  | |||| ||  ||| | |      ||||| |   | | ||| | | |||||            
GTATTTGATACGCTCAGGATAATTATGTTTGTGTTAGGCATGACATTTGTCTTTGTTGGGATTTCCTTGCTAGCACCCGATGACAGTAAAGgttggtaaaacgttgattttcatgtgtttgcacatagaagattttgactct---tggtgaactgtcggcag------------

upper sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G477146_T02 (Zea mays), 5'ss of exon 11
GTATTTGATACCCTGAGGATAGTGATGTTTGTATTGGGCATGACATCTGTCTTTATAGGCATCTCCTTACTGGCACCCGACGACAGTAAAGgtttgtgaa--gttcactgccgtgtgcttttacagaaatatacatgactttaacttgagaattcttggcagttgacaccaaag
||||||||||| || |||||| | |||||||| || |||||||||| ||||||| | || || ||||| || |||||||| ||||||||||||| || ||  ||| | |  | |||| ||  ||| | |      ||||| |   | | ||| | | ||||| ||| || ||||
GTATTTGATACGCTCAGGATAATTATGTTTGTGTTAGGCATGACATTTGTCTTTGTTGGGATTTCCTTGCTAGCACCCGATGACAGTAAAGgttggtaaaacgttgattttcatgtgtttgcacatagaagattttgactct---tggtgaactgtcggcagctgatacgaaag