1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATCAGTCTGATAATAAAAAGCAATATGAGCTTGATGTTGACCGCATTGTTCGTGGTGATGACTCCCGGACTACGCTGATGATAAAGAATATCCCAAACAAgtatgtgtaacaactgttaatttaggttcatttttttttcttgcctttgccttcttttctgtcattttcatgtatttctaattgacttgggattccag
species | Oryza sativa |
transcript | LOC_Os02g31290.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CGTGGTGATGACTCCCGGACTACGCTGATGATAAAGAATATCCCAAACAA GTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGACEST: gi|58691922|gb|CK080609.1|CK080609
genomic: CGTGGTGATGACTCCCGGACTACGCTGATGATAAAGAATATCCCAAACAAgtatgtgtaa ... gggattccagGTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGAC
EST: CGTGGTGATGACTCCCGGACTACGCTGATGATAAAGAATATCCCAAACAA GTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGACEST: gi|56158059|gb|C72031.2|C72031
genomic: CGTGGTGATGACTCCCGGACTACGCTGATGATAAAGAATATCCCAAACAAgtatgtgtaa ... gggattccagGTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGAC
EST: CGTGGTGATGACTCCCGGACTACGCTGATGATAAAGAATATCCCAAACAA GTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGACEST: gi|66930475|gb|CX117323.1|CX117323
genomic: CGTGGTGATGACTCCCGGACTACGCTGATGATAAAGAATATCCCAAACAAgtatgtgtaa ... gggattccagGTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGAC
EST: CGTGGTGATGACTCCCGGACTACGCTGATGATAAAGAATATCCCAAACAA GTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGAC
genomic: CGTGGTGATGACTCCCGGACTACGCTGATGATAAAGAATATCCCAAACAAgtatgtgtaa ... gggattccagGTACACCTCAAAGATGCTTCTAGCTGCTATTGATGAAAATCATAAAGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAGTCTGATAATAAAAAGCAATATGAGCTTGATGTTGACCGCATTGTTCGTGGTGATGACTCCCGGACTACGCTGATGATAAAGAATATCCCAAACAAgtatgtgtaacaactgttaatttaggttcatttttttttcttgcctttgccttcttttctgtcattttcatgtatttctaattgacttgggattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA