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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAATGGTGAACTAGTTCTATCAAACCCTACAAAACAAGGGAAGGAAGGGGGCAAAAATTTCACATTTAACAAAGTTTTTGGCCCTATCACTACACAAGgtacatgataagtggtcagtacaacttaatcttctgttgggtttccattgaagctattgcatcaaattagttcaacaaatccttcaaaaaattatatcccataatagtgtatgtcatatacatcaattctcttatccctcttattttgttaatag

Basic information

species Oryza sativa
transcript LOC_Os02g13580.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 4
GACAATGGTGAACTAGTTCTATCAAACCCTACAAAACAAGGGAAGGAAGGGGGCAAAAATTTCACATTTAACAAAGTTTTTGGCCCTATCACTACACAAGgtacatgataagtggtcagtacaacttaatcttctgttgggtttccattgaagctattgcatcaaattagttcaacaaatccttcaaaaaattatatcccataatagtgtatgtcatatacatcaattctcttatccctcttattttgttaatag
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GAGAATGGTGAACTGGTTTTATCAAACCCTACAAAGAAGGGAAAGGAAGCCGGCAAGAATTTCACTTTTAACAAGGTTTTTGGCCCTACAGCTACACAAGgtgc-taatgacattgaaataaaaatatatcttttgtttaa--tctattta----attgctataagt--actcataaaata--gcactgagttatac--------attttttgtcatatctttc---tttcttgtttgttatag-----------