1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACCTGTATATCCGCAACAGCAACATGCATACCCCCAACCTGCGAAAGCATCAAATCCTTTTGATCTTGGGAATGAGCCAGCTCCAGTTCAAGCTCACACGgtatgaatgaagagaatgaaatacctcttttacaaaatatctcaaactaagatcgtttcacttactattcttgtaaatcttgaggtatcttgtctattaa...
species | Oryza sativa |
transcript | LOC_Os02g11820.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAAATCCTTTTGATCTTGGGAATGAGCCAACTCCAGTTCAAGCTCACACG CAGCAGCCCCTACCTGGACCACTGGGAGCATCTGCTGGCATGACTCCCACAEST: gi|87038360|gb|CI192982.1|CI192982
genomic: CAAATCCTTTTGATCTTGGGAATGAGCCAGCTCCAGTTCAAGCTCACACGgtatgaatga ... ccttgagcagCAGCAGCCCCTACCTGGACCACTGGGAGCATCTGCTGGCATGACTCCCCCA
EST: CAAATCCTTTTGATCTTGGGAATGAGCCAGCTCCAGTTCAAGCTCACACG CAGCAGCCCCTACCTGGACCACTGGGAGCATCTGCTGGCATGACTCCCCCAEST: gi|29674781|gb|CB671056.1|CB671056
genomic: CAAATCCTTTTGATCTTGGGAATGAGCCAGCTCCAGTTCAAGCTCACACGgtatgaatga ... ccttgagcagCAGCAGCCCCTACCTGGACCACTGGGAGCATCTGCTGGCATGACTCCCCCA
EST: CAAATCCTTTTGATCTTGGGAATGAGCCAGCTCCAGTTCAAGCTCACACG CAGCAGCCCCTACCTGGACCACTGGGAGCATCTGCTGGCATGACTCCCCCAEST: gi|87016249|gb|CI271660.1|CI271660
genomic: CAAATCCTTTTGATCTTGGGAATGAGCCAGCTCCAGTTCAAGCTCACACGgtatgaatga ... ccttgagcagCAGCAGCCCCTACCTGGACCACTGGGAGCATCTGCTGGCATGACTCCCCCA
EST: TTTTGATCTTGGGAATGAGCCAGCTCCAGTTCAAGCTCACA-- C-GCAGCCCCTACCTGGACCACTGGGAGCATCTGCTGGCATGACTCCCCCA
genomic: TTTTGATCTTGGGAATGAGCCAGCTCCAGTTCAAGCTCACACGgtatgaatga ... ccttgagcagCAGCAGCCCCTACCTGGACCACTGGGAGCATCTGCTGGCATGACTCCCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTGTATATCCGCAACAGCAACATGCATACCCCCAACCTGCGAAAGCATCAAATCCTTTTGATCTTGGGAATGAGCCAGCTCCAGTTCAAGCTCACACGgtatgaatgaagagaatgaaatacctcttttacaaaatatctcaaactaagatcgtttcacttactattcttgtaaatcttgaggtatcttgtctattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA