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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGGACTTTAACACAGCAACTAGCACACCACACTGTTAATGGATGCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaataaccatttcaaatatcaccataaacataccaatctagaagttatcgtgcatgtttacaactaaacatctgccttctttcag

Basic information

species Oryza sativa
transcript LOC_Os02g10310.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g10310.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G093359_T02 (Zea mays), 5'ss of exon 11
GTATTGGACTTTAACACAGCAACTAGCACACCACACTGTTAATGGATGCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaataaccatttcaaatatcaccataaacataccaatctagaagttatcgtgcatgt---ttacaactaaacatctgccttctttcag
                   || ||| ||||||||||| | |||||||||||  |||| || |||||||| ||||||||||||||||| || ||||||||||||||||| |||| ||  | | | |||  ||||   | |   |   |  |  | ||| |   |  ||  |  |||| || |   ||||||
-------------------CAGCTAACACACCACACTATCAATGGATGCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCTgtatggaataaacattgcatcttttatcattgacatgtaactgagggtttccttatccatatgaatctcattttgacatgtgaca--tttcag

upper sequence: LOC_Os02g10310.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G093359_T01 (Zea mays), 5'ss of exon 12
GTATTGGACTTTAACACAGCAACTAGCACACCACACTGTTAATGGATGCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaataaccatttcaaatatcaccataaacataccaatctagaagttatcgtgcatgt---ttacaactaaacatctgccttctttcag
|||||||||  | || ||||| ||| ||||||||||| | |||||||||||  |||| || |||||||| ||||||||||||||||| || ||||||||||||||||| |||| ||  | | | |||  ||||   | |   |   |  |  | ||| |   |  ||  |  |||| || |   ||||||
GTATTGGACGGTGACGCAGCAGCTAACACACCACACTATCAATGGATGCAACATGAGGCCGGGGGATATATTTGCAACTGGCACACTCAGTGGACCTgtatggaataaacattgcatcttttatcattgacatgtaactgagggtttccttatccatatgaatctcattttgacatgtgaca--tttcag

upper sequence: LOC_Os02g10310.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G029566_T01 (Zea mays), 5'ss of exon 12
GTATTGGACTTTAACACAGCAACTAGCACACCACACTGTTAATGGATGCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaataaccatttcaaatatcaccataaacataccaatctagaagttatcgtgcatgtttacaactaaacatctgccttctttcag
|||||||||  | |||||||| ||||||||||||||  | || ||||||||  |||| || |||||||| ||||| ||||||||||| || ||||||||||||| ||| |||| ||| |   |     |   ||  |||||  |  ||  | ||     || ||                       
GTATTGGACGCTGACACAGCAGCTAGCACACCACACCATCAACGGATGCAACATGAGGCCGGGGGATATATTTGCGACTGGCACACTGAGTGGACCTgtatggagtaaacattgcaacttctatacccatagtatgaatctt-actttgacatgtgccatttcag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660372|gb|CB656647.1|CB656647
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88509084|gb|CI436590.1|CI436590
EST:     TGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: TGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|86250845|gb|CI007708.1|CI007708
EST:     GGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88907444|gb|CI090238.1|CI090238
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|29672587|gb|CB668862.1|CB668862
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|29612852|gb|CB617865.1|CB617865
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|29657905|gb|CB654180.1|CB654180
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88522799|gb|CI450521.1|CI450521
EST:     CAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGGCTAACATGGAATGGGCAGAA
genomic: CAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAG-CTAACATGGAATGGGCAGAA
EST: gi|86853881|gb|CI329327.1|CI329327
EST:     GAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|86599975|gb|CI258315.1|CI258315
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88968670|gb|CI098862.1|CI098862
EST:     CACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: CACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|29671043|gb|CB667318.1|CB667318
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|86428798|gb|CI075479.1|CI075479
EST:     GGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|89163120|gb|CI100010.1|CI100010
EST:     TAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: TAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|55409338|gb|CV721714.1|CV721714
EST:     CTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: CTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|117232667|gb|CT861058.1|CT861058
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|29637362|gb|CB642371.1|CB642371
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|86839226|gb|CI331496.1|CI331496
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|14981127|gb|BI305818.1|BI305818
EST:     GCAATCTGAGACC-GGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88266268|gb|CI377170.1|CI377170
EST:     ATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: ATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88420084|gb|CI513765.1|CI513765
EST:     ACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: ACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88904130|gb|CI006363.1|CI006363
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|29672144|gb|CB668419.1|CB668419
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88905999|gb|CI089585.1|CI089585
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|29636552|gb|CB641561.1|CB641561
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|29636597|gb|CB641606.1|CB641606
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|86840389|gb|CI342574.1|CI342574
EST:     ACACTAACCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: ACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|86496229|gb|CI138862.1|CI138862
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|29664840|gb|CB661115.1|CB661115
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88251258|gb|CI349686.1|CI349686
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTTGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88223961|gb|CI223810.1|CI223810
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|86433902|gb|CI094245.1|CI094245
EST:     GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCCAACATGGAATGGGCAGAAG
genomic: GCAATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|88259120|gb|CI363413.1|CI363413
EST:     ATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
genomic: ATCTGAGACCAGGGGATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGGATGTTTGCTGGAGCTAACATGGAATGGGCAGAAG
EST: gi|27548667|gb|CA766758.2|CA766758
EST:     CAATCTGAGACCAGGGGGATATGTTTGCAACTGGCACACTAAGCGGACCT                         GAGACAGAATCTTTGGGGATGNTTGC
genomic: CAATCTGAGACCAGGGG-ATATGTTTGCAACTGGCACACTAAGCGGACCTgtatggaata ... cttctttcagGAGACAGAATCTTTGGG-ATGTTTGC