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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagctttttatcaattcattcaccatctttacttaccaggcaatctgtaaaaattttcaactgcaatagcaataatgccgttttctggttctctgaag

Basic information

species Oryza sativa
transcript LOC_Os02g10070.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 10
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagctttttatca-attcattcaccatctttacttaccag-gcaatctgtaaaaattttcaactgcaatagcaataatgccgttttctggttctctgaag---------------------------------
| | ||||||||||| |||||||| |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||  ||| ||  || |  ||  |||   | | |   |     ||   |    |  | |    |     ||| |  |||| | | || |   |                                   
GCTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgttcagatatatgcttcaatttttaatgcaattactggaggtcgcatcacttgaattttgtgaagttaaagttgtttacagattttagaattaatgattaatattctttcatttgttgtttgaag

upper sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 12
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagctttttatcaa----ttcattcaccatct-------ttact--------taccaggcaa--tctgtaaa-----aattttcaac------tgcaatagc--aataatgccgtttt-ctggttctctgaag
||| ||||||||||| |||||||| ||||||||  |||| ||||| |||||| |||||||||| |||||||||||||||||||||||  |||     ||  ||||   | |       |||||         | ||  | |  | ||||||     |||| || ||      |  |||     ||||||    |||   | ||||| |||||
GTTTTGGGAGCCTACTTATGAAGACTGCTTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgttcagacatttgcttcaatttttaatgcaattactggaggtggcatcactcgaattttgtaaagttaaaattgtctacaaattttagaattattgaataatattatttcatttgttctttgaag

upper sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 11
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagctttttatca--attcattcaccatc--tttacttaccag--gcaatctgtaaaaattttcaactgcaatagcaata-----atgccgtttt----ctggttctctgaag-------------------------------------------
||| ||||||||||| |||||||| |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||||||  | |  | |  ||||   |   |  ||||||  |  |  |  |     ||||||   ||| | |||   |      |||   ||||    | | | |  | ||                                            
GTTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgtttagaaatgtttcatttttaatgcacttactggtggtgacatcagtcaattttttcctgaactagttgtgtacagatgtttttttgaaacagctgcattcaaattttagaattaatgaattatattgtttcatttgttttttgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58695418|gb|CK084105.1|CK084105
EST:     TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAG                         GATATTCAAGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATGC
genomic: TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagcttttt ... ttctctgaagGATATTCAAGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATGC
EST: gi|218505577|gb|FG949556.1|FG949556
EST:     TTAAATTTGATA-CTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAG                         GATATTCAAGGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATG
genomic: TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagcttttt ... ttctctgaagGATATTCAA-GGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATG
EST: gi|29614058|gb|CB619071.1|CB619071
EST:     TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAG                         GATATTCAAGGGAAGGGAAAACTATAG
genomic: TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagcttttt ... ttctctgaagGATATTCAAGGGA-GGGAAAACTATAG
EST: gi|33794400|gb|CF323084.1|CF323084
EST:     TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAG                         GATATTCAAGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATGC
genomic: TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagcttttt ... ttctctgaagGATATTCAAGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATGC
EST: gi|14571277|gb|BI118645.1|BI118645
EST:     TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAG                         GATATTCAAGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATGC
genomic: TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagcttttt ... ttctctgaagGATATTCAAGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATGC
EST: gi|58599089|gb|CK009617.1|CK009617
EST:     TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAG                         GATATTCAAGGG
genomic: TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagcttttt ... ttctctgaagGATATTCAAGGG
EST: gi|33794508|gb|CF323141.1|CF323141
EST:     TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAG                         GATATTCAAGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATGC
genomic: TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagcttttt ... ttctctgaagGATATTCAAGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATGC
EST: gi|58668188|gb|CK056874.1|CK056874
EST:     TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAG                         GATATTCAAGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATGC
genomic: TTAAATTTGATAGCTCGCCTTCCAGCAGTGGCTTCATATGTTTACCGGAGgtagcttttt ... ttctctgaagGATATTCAAGGGAGGGAAAACTATAGCAGCTGATAATGCACTGGATTATGC