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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAACAGAGGTTCCTGAACGGAGGCAGGTTCGTGAAATAAATTTGGCGGTACCAGgtatagatgcttgtaaatctgatctatcaggtcttttagtactgtaatactattcacatttttaagttcagatgtataaaataactattcaattgctggcag

Basic information

species Oryza sativa
transcript LOC_Os02g07960.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07960.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G335638_T01 (Zea mays), 5'ss of exon 11
GATCAACAGAGGTTCCTGAACGGAGGCAGGTTCGTGAAATAAATTTGGCGGTACCAGgtatagatgcttgtaaatctgatctatcaggtcttttagtactgtaatactattcacatttttaagttcagatgtataa--aataactattcaattgctggcag
| ||| | |||||||||||| | | | ||   || ||||||||||| || |||||||||||| ||||||| |||||||| | ||||  ||||||  |||| |||| || ||       | ||||  |||||||||   | |||| ||  |  || | ||||
GTTCATCTGAGGTTCCTGAAAGAAAGAAGCCCCGAGAAATAAATTTAGCTGTACCAGgtatatatgcttgcaaatctgaccaatcaattcttttgttactataatgctgtt-------tcaagtatagatgtatatgtactaaccata-agctgtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29631498|gb|CB636507.1|CB636507
EST:     AGAGGTTCCTGAACGGAGGCAGGTTCGTGAAATAAATTTGGCGGTACCAG                         CTGCTCTCGAGAAGCCTCCTGAAAAGAGAAAAGAACATGTAATTAACTTGC
genomic: AGAGGTTCCTGAACGGAGGCAGGTTCGTGAAATAAATTTGGCGGTACCAGgtatagatgc ... ttgctggcagCTGCTCTCGAGAAGCCTCCTGAAAAGAGAAAAGAACATGTAATTAACTTGC