1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGGGCAATGCTGACTTTAATTTATGCTGGACAGgtattttttttattgtcaatttaattctcataggaataacttgtttatcaaatgatctctgtaactatttaatttggatgtaag
species | Oryza sativa |
transcript | LOC_Os02g04750.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATGCAGTGAATACTGCTTGGGCAATGCTGACTTTAATTTATGCTGGACAG ATGGAGCGAGATCCAGCCCCGCTGCATTGTGCTGCAAAAGAATTAATCAATEST: gi|38483023|gb|CF966825.1|CF966825
genomic: ATGCAGTGAATACTGCTTGGGCAATGCTGACTTTAATTTATGCTGGACAGgtattttttt ... tggatgtaagATGGAGCGAGATCCAGCCCCGCTGCATTGTGCTGCAAAAGAATTAATCAAT
EST: ATGCAGTGAATACTGCTTGGGCAATGCTGACTTTAATTTATGCTGGACAG ATGGAGCGAGATCCAGCCCCGCTGCATTGTGCTGCAAAAGAATTAATCAATEST: gi|117230816|gb|CT854085.1|CT854085
genomic: ATGCAGTGAATACTGCTTGGGCAATGCTGACTTTAATTTATGCTGGACAGgtattttttt ... tggatgtaagATGGAGCGAGATCCAGCCCCGCTGCATTGTGCTGCAAAAGAATTAATCAAT
EST: ATGCAGTGAATACTGCTTGGGCAATGCTGACTTTAATTTATGCTGGACAG ATGGAGCGAGATCCAGCCCCGCTGCATTGTGCTGCAAAAGAATTAATCAATEST: gi|58690416|gb|CK079103.1|CK079103
genomic: ATGCAGTGAATACTGCTTGGGCAATGCTGACTTTAATTTATGCTGGACAGgtattttttt ... tggatgtaagATGGAGCGAGATCCAGCCCCGCTGCATTGTGCTGCAAAAGAATTAATCAAT
EST: ATGCAGTGAATACTGCTTGGGCCATGCTGACTTTAATTTATGCTGGACAG ATGGAGCGAGATCCAGCCCCGCTGCATTGTGCTGCAAAAGAATTAATCAAT
genomic: ATGCAGTGAATACTGCTTGGGCAATGCTGACTTTAATTTATGCTGGACAGgtattttttt ... tggatgtaagATGGAGCGAGATCCAGCCCCGCTGCATTGTGCTGCAAAAGAATTAATCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGGGCAATGCTGACTTTAATTTATGCTGGACAGgtattttttttattgtcaatttaattctcataggaataacttgtttatcaaatgatctctgtaactatttaatttggatgtaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA