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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgttaaattgttaacatgacattggactcgttattttcttcagaacatcatggatagtcttattgaagcaccaaaatatttgttccag

Basic information

species Oryza sativa
transcript LOC_Os02g03580.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g03580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G153144_T01 (Zea mays), 5'ss of exon 12
GATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgttaaatt---gttaacatgacattggactcgttattt--tcttcagaacatcatggatagtcttattgaagcaccaaaatatttgttccag--------
|||||||| || ||||||||||| ||| |||||||||||||| | ||||| ||||| ||||||||||||||||||||||| |  ||  | | |   | ||||||    |||    |   | |   |||||  |   ||| |   | | |  |    ||          || ||| |         
GATGAAAGGGAACTCAAGAAGCAAAAACGGAAGCAGTCTAATAGAGAATCGGCACGCAGATCCCGGCTGCGCAAGCAGgtgttgtgcaacactaatgctaacatcgtcttgcttcctgaactccatcttctaagtttcaagaggattttgttcagtgctttcgtgatcttattcgattattctag

upper sequence: LOC_Os02g03580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G019106_T01 (Zea mays), 5'ss of exon 12
GATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgttaaatt---gttaacatg-acattg--gactcgttattttcttc--agaacatcatggatagtcttattgaa-gcaccaaaatatttgttccag---------
|||||||| |||||||||||||||||  |||||||||| ||  | || || || || ||||||||||||||||| |||||    ||  |   |   | | |||   ||  ||    ||   | |  |||||  |||    || |   | | |  |  || ||    |    | |  | | |         
GATGAAAGGGAGCTCAAGAAGCAGAAGCGGAAGCAGTCAAACAGAGAGTCCGCTCGCAGATCCCGGCTGCGCAAACAGgtgctgtgcaaccctcgtgctgacacccaccctgctagctgaatttcatcttctaagagacccaagagaaatttcgtccaacgctttcatgggtcttgttcggttgttccag

upper sequence: LOC_Os02g03580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA08G34280.1 (Glycine max), 5'ss of exon 11
GATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgttaaattgttaacatgacattggactcgttattttcttcagaacatcatgg--atagtcttattgaagcaccaaa-atatttgttccag
|| ||||||||||| || |  || |   |||||||||||||||||||||| ||||| |||||| || | || ||||||||          |  |  |  || || ||   |    |  |   | |||  ||| || |  ||| | | | |            || ||  |  |||
GACGAAAGAGAGCTTAAAAGACAAAGGCGGAAGCAGTCTAATCGGGAATCTGCACGCAGATCCAGGTTACGGAAGCAGgtg---------acagagagtataacctttttcatacttctggttgcaggtcataattgtcatattttaaatccctttttgtgcatgttgttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89197742|gb|CI013732.1|CI013732
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|88903327|gb|CI088865.1|CI088865
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|113931076|gb|DQ883825.1|DQ883825
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACA
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACA
EST: gi|29670500|gb|CB666775.1|CB666775
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|86497997|gb|CI140630.1|CI140630
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|86505811|gb|CI148444.1|CI148444
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|88850496|gb|CI093177.1|CI093177
EST:     AGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: AGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|86879457|gb|CI327145.1|CI327145
EST:     GGGAATCAGCACGTAGATCCCGGCTGGGCAAGCAG                         GCTGAGTGT-AAGAGCTTTGTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|29670501|gb|CB666776.1|CB666776
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|88829448|gb|CI074318.1|CI074318
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGCACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|88965389|gb|CI011640.1|CI011640
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|29665043|gb|CB661318.1|CB661318
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|88517412|gb|CI445066.1|CI445066
EST:     GAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|32948093|gb|BP184665.1|BP184665
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACA
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACA
EST: gi|86488210|gb|CI130843.1|CI130843
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|86252236|gb|CI055973.1|CI055973
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACCATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|88958454|gb|CI095970.1|CI095970
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
EST: gi|89172965|gb|CI040858.1|CI040858
EST:     GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAG                         GCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC
genomic: GGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGgtatgatgtt ... tttgttccagGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAAC