1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGAGCTTGACTCTGAAAGGTGGGGCCTACGCTGCCAGGCTGCTTTCAGCAAATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttcaattcctgttctgtgttcatgttggtttatgtagctacctcatatttagtgaatgaagtgattttgtccacagaagatattatttcttaca...
species | Oryza sativa |
transcript | LOC_Os02g03410.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG ---CA-CAC--TGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCEST: gi|88217712|gb|CI217561.1|CI217561
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... tactttcaagGTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCC
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG GTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCEST: gi|87027206|gb|CI278238.1|CI278238
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... tactttcaagGTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCC
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG GTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCEST: gi|29680387|gb|CB676662.1|CB676662
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... tactttcaagGTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCC
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG GTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCEST: gi|66917356|gb|CX104204.1|CX104204
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... tactttcaagGTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCC
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAA-- -T---GCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCEST: gi|44675829|gb|CR289263.1|CR289263
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... tactttcaagGTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCC
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG GTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCCEST: gi|29657421|gb|CB653696.1|CB653696
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... tactttcaagGTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCC
EST: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATG GTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCC
genomic: AATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttca ... tactttcaagGTGCAGCACACTGGCTTGAAGGGTTCCATCGAGCCATTGCTGGAGGAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCTTGACTCTGAAAGGTGGGGCCTACGCTGCCAGGCTGCTTTCAGCAAATTTGATCTGGATGGTGACGGATACATCACTCCAGATGAACTCAGAATGgtaagtttcaattcctgttctgtgttcatgttggtttatgtagctacctcatatttagtgaatgaagtgattttgtccacagaagatattatttcttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG