1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACGAGTTGATGGATTTGAGTATGGCGGTGTGAATGAATTCATAGCTGACATGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGgtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatgg...
species | Oryza sativa |
transcript | LOC_Os02g02290.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAG GTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGEST: gi|58690000|gb|CK078687.1|CK078687
genomic: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGgtaatttcat ... caaaatgcagGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAG
EST: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAG GTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGEST: gi|44673834|gb|CR287268.1|CR287268
genomic: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGgtaatttcat ... caaaatgcagGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAG
EST: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAG GTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGEST: gi|29679434|gb|CB675709.1|CB675709
genomic: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGgtaatttcat ... caaaatgcagGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAG
EST: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAG GTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGEST: gi|29656482|gb|CB652757.1|CB652757
genomic: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGgtaatttcat ... caaaatgcagGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAG
EST: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAG GTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGEST: gi|29682168|gb|CB678443.1|CB678443
genomic: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGgtaatttcat ... caaaatgcagGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAG
EST: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAG GTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGEST: gi|58652411|gb|CK041091.1|CK041091
genomic: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGgtaatttcat ... caaaatgcagGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAG
EST: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAG GTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGEST: gi|58674239|gb|CK062925.1|CK062925
genomic: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGgtaatttcat ... caaaatgcagGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAG
EST: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAG GTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAG
genomic: TGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGgtaatttcat ... caaaatgcagGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGAGTTGATGGATTTGAGTATGGCGGTGTGAATGAATTCATAGCTGACATGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGgtaatttcatagtactagaaaagcttccttttttgtccttaatttgtataaattgaagtatcatgggggtcattccaatgctgacaccatgggtccatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT