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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaatatggaaatgaaaatgtgtaataatagggagagaaatgagcgatgtattaattcactgtacattgtattgtggctttgatttacag

Basic information

species Oryza sativa
transcript LOC_Os02g01100.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88266546|gb|CI377448.1|CI377448
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|86498766|gb|CI141399.1|CI141399
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88484073|gb|CI421344.1|CI421344
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88516600|gb|CI444254.1|CI444254
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88991353|gb|CI034688.1|CI034688
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88489526|gb|CI426798.1|CI426798
EST:     CATGCGCCTGTTTCTTGNCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|58686741|gb|CK075428.1|CK075428
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88515198|gb|CI442852.1|CI442852
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88284203|gb|CI405649.1|CI405649
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88470483|gb|CI407754.1|CI407754
EST:     CATGCCCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|27548100|gb|CA766182.2|CA766182
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88272468|gb|CI386323.1|CI386323
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|40494256|gb|BX901140.1|BX901140
EST:     CATGCGCCTGTTTCTTGCCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATGATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88544177|gb|CI474251.1|CI474251
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88275672|gb|CI396276.1|CI396276
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|29659581|gb|CB655856.1|CB655856
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|89167449|gb|CI038956.1|CI038956
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|89168324|gb|CI109528.1|CI109528
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|29678444|gb|CB674719.1|CB674719
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88253485|gb|CI352111.1|CI352111
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         A-TGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88992255|gb|CI035393.1|CI035393
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|29663318|gb|CB659593.1|CB659593
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88980182|gb|CI026471.1|CI026471
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88274864|gb|CI388322.1|CI388322
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
EST: gi|88840439|gb|CI079893.1|CI079893
EST:     CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTGGGCATCAG                         ATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG
genomic: CATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaat ... tgatttacagATTGCAGCTTGCTCATTCATCATCGTGGTAGGGGTTTGCTGCGCTTGCGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCTACATCCTTCCATGCGCCTGTTTCTTGGCCATCCTTAAGAGAAAAGTGACTTGGCATCAGgtacaaaaatatggaaatgaaaatgtgtaataatagggagagaaatgagcgatgtattaattcactgtacattgtattgtggctttgatttacag

- - - - - - - - - - - - - - - - - - -  AAGAGA