1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgcccaaatatgtgtcatgtcttattgaggggtgcatttgttactgtatgtaatctgtctctcagtaggtttgttacctctctcttcggtagaat...
species | Oryza sativa |
transcript | LOC_Os02g01010.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|86893336|gb|CI313437.1|CI313437
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|15849945|gb|BI798221.1|BI798221
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGA-CCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|86546649|gb|CI186855.1|CI186855
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|88970357|gb|CI383859.1|CI383859
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|89179758|gb|CI044037.1|CI044037
genomic: GTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: ATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|88295807|gb|CI532768.1|CI532768
genomic: ATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: TTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCNTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|86483506|gb|CI126139.1|CI126139
genomic: TTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: CAGCAGGAAAGAAAAGTTTGGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|86871789|gb|CI331166.1|CI331166
genomic: CAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: ACGATCCTCTTTTATCCACCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGA-GGGGACCCTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|15850569|gb|BI798845.1|BI798845
genomic: ACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: ATTCCCAACGATGCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|89193503|gb|CI050801.1|CI050801
genomic: ATTCCCAACGAT-CCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|87034915|gb|CI188718.1|CI188718
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|2797997|gb|AA751291.1|AA751291
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACG-TGGTGGAGATGTACAAGTTTATCAAGEST: gi|86545063|gb|CI185269.1|CI185269
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|86837598|gb|CI345781.1|CI345781
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: CCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|88276074|gb|CI396678.1|CI396678
genomic: CCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GTTTTGAGCCT ATTACTTTTGA-GGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|29660339|gb|CB656614.1|CB656614
genomic: GTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|88269895|gb|CI381193.1|CI381193
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGCGTGGTGGAGATGTACAAGTTTATCAAEST: gi|88265825|gb|CI376727.1|CI376727
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACG-GTGGTGGAGATGTACAAGTTTATCAA
EST: AAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGCTGGTGGAGATGTACAAGTTTATCAAGEST: gi|86511920|gb|CI154553.1|CI154553
genomic: AAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|89184057|gb|CI046622.1|CI046622
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|89175957|gb|CI042978.1|CI042978
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: CCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|86845536|gb|CI346893.1|CI346893
genomic: CCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: CAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|58681044|gb|CK069731.1|CK069731
genomic: CAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|86493340|gb|CI135973.1|CI135973
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|86509792|gb|CI152425.1|CI152425
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|86536022|gb|CI176228.1|CI176228
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGAGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|88839098|gb|CI378022.1|CI378022
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCACCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|88466414|gb|CI529823.1|CI529823
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: TCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAGEST: gi|88250194|gb|CI250471.1|CI250471
genomic: TCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
EST: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCT ATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
genomic: GATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgccc ... ttgtgtgcagATTACTTTTGAGGGGGACCGTACGGTGGTGGAGATGTACAAGTTTATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTGAGCCTgtaagtgcccaaatatgtgtcatgtcttattgaggggtgcatttgttactgtatgtaatctgtctctcagtaggtttgttacctctctcttcggtagaat
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctct