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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTCCACTGATATTGTATGCCCAATGTACATGCGTGTCTGGGATATTCTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGAgtatgttcaatgcagcctcacatgttaacttgttccccttttttgtattaaaattccagaaatgttaaagaaaattttccattttgttttcaag

Basic information

species Oryza sativa
transcript LOC_Os01g72340.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g72340.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G032496_T01 (Zea mays), 5'ss of exon 3
CATCCTCCACTGATATTGTATGCCCAATGTACATGCGTGTCTGGGATATTCTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGAgtatgttcaatgcagcctcacatgttaacttgttccccttttttgtattaaaattccagaaatgttaaagaaaattttccattttgttttcaag
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CATCATCCACAGATATTGTGTGCCCCATGTATATGCGTGTCTGGGATGTTGTTAAGATAGCAAAAGATCCATCTGAAACAAGGCCTCTAATTCTTTGCGAgtatgctaagcatgacctcacatattaata---accctttatccgtattcatat----gatttgatgaaagaactttttccttttgctttcaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688410|gb|CK077097.1|CK077097
EST:     CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGA                         ATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
genomic: CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGAgtatgttcaa ... tgttttcaagATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
EST: gi|58692909|gb|CK081596.1|CK081596
EST:     CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGA                         ATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
genomic: CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGAgtatgttcaa ... tgttttcaagATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
EST: gi|14571259|gb|BI118627.1|BI118627
EST:     CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGA                         ATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
genomic: CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGAgtatgttcaa ... tgttttcaagATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
EST: gi|58687216|gb|CK075903.1|CK075903
EST:     CTGAAAATAGGCCCCTCATTCTTTGCGA                         ATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
genomic: CTGAAAATAGGCCCCTCATTCTTTGCGAgtatgttcaa ... tgttttcaagATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
EST: gi|58663708|gb|CK052394.1|CK052394
EST:     CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGA                         ATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
genomic: CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGAgtatgttcaa ... tgttttcaagATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
EST: gi|38568808|gb|CD671023.1|CD671023
EST:     CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGA                         ATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
genomic: CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGAgtatgttcaa ... tgttttcaagATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
EST: gi|29657376|gb|CB653651.1|CB653651
EST:     CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGA                         ATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
genomic: CTTAAGATCGCACAAGACCCTTCTGAAAATAGGCCCCTCATTCTTTGCGAgtatgttcaa ... tgttttcaagATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
EST: gi|58670588|gb|CK059274.1|CK059274
EST:     GAAAATAGGCCCCTCATTCTTTGCGA                         ATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT
genomic: GAAAATAGGCCCCTCATTCTTTGCGAgtatgttcaa ... tgttttcaagATATTCACATGCTATGGGAAACAGTAATGGAAATATTGATGCATATTGGAT