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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGAGGATGCGTGGCCTCCGATGCCATCTCATGTACTGCAGGAATGCAACAAGGCTTCAAGTTGTTCCTCTTCTAGCATCGAGGTCACAAGCACTCAGgtgaagtctacatacaagttttacacactgtagtgtgattactgtagcatttacggcaacagatggtcttattggcaatttctcgtaaattcag

Basic information

species Oryza sativa
transcript LOC_Os01g69030.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g69030.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G140107_T01 (Zea mays), 5'ss of exon 12
GGGTGAGGATGCGTGGCCTCCGATGCCATCTCATGTACTGCAGGAATGCAACAAGGCTTCAAGTTGTTCCTCTTCTAGCATCGAGGTCACAAGCACTCAGgtgaagtctacatacaagttttacacactgtagtgtgattactgtagcatttacggcaacagatggtcttattggcaatttctcgtaaattcag
|| ||||||||||||| ||||| |||||  ||||||||||||||||  | ||||||||||| ||||| ||||| |||||||| |||||||| |||||||||| |||   |||||||   | ||    ||    ||    |   || | | ||  | || |  ||| |   | |  | |        ||||||||
GGCTGAGGATGCGTGGTCTCCGGTGCCACATCATGTACTGCAGGAACTCGACAAGGCTTCAGGTTGTCCCTCTGCTAGCATCAAGGTCACAGGCACTCAGgt-aagaacacatacataatcta---gct----tgaagctgtcgtggaacttctgccagccaatgttgcaaataactacaaa--aaaaattcag

upper sequence: LOC_Os01g69030.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM5G875238_T01 (Zea mays), 5'ss of exon 11
GGGTGAGGATGCGTGGCCTCCGATGCCATCTCATGTACTGCAGGAATGCAACAAGGCTTCAAGTTGTTCCTCTTCTAGCATCGAGGTCACAAGCACTCAGgtgaagtctacatacaagttttacacactgtagtgtgattactgtagcatttacggcaacagatggtcttattggcaatttctc-gtaaattcag-----------------------
|| ||||||||||||| ||||| |||||  ||||||||||||||||  | ||||||||||| ||||| ||||| |||||||| |||||||| |||||||||| |     |||||||   | ||   |   |     | |  |      ||||  |  |||| | | |   | ||   || | || ||||   ||                        
GGCTGAGGATGCGTGGTCTCCGCTGCCACATCATGTACTGCAGGAACTCGACAAGGCTTCAGGTTGTCCCTCTGCTAGCATCAAGGTCACAGGCACTCAGgtaaga---acatacagaatctatctaacctgaaaagctctcgtggaaatttctgataacaaaagttgcgaatgtggatctgtctgtaataacaaataaaaaaaaaattcaatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58609199|gb|CK037232.1|CK037232
EST:     ACAAGGCTTCAAGTTGTTCCTCTTCTAGCATCGAGGTCACAAGCACTCAG                         GTATCTTTTCGTACGCTGGGGCCTGTCTGTGGGAAACATGTATCTGATCGT
genomic: ACAAGGCTTCAAGTTGTTCCTCTTCTAGCATCGAGGTCACAAGCACTCAGgtgaagtcta ... gtaaattcagGTATCTTTTCGTACGCTGGGGCCTGTCTGTGGGAAACATGTATCTGATCGT
EST: gi|8856968|gb|AU094286.1|AU094286
EST:     TTGTTCCTCTTCTAGCATCGAGGTCACAAGCACTCAG                         GTATCTTTTCGTACGCTGGGGCCTGTCTGTGGGAAACATGTATCTGATCGT
genomic: TTGTTCCTCTTCTAGCATCGAGGTCACAAGCACTCAGgtgaagtcta ... gtaaattcagGTATCTTTTCGTACGCTGGGGCCTGTCTGTGGGAAACATGTATCTGATCGT