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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCAGTTATGTTGGTAATGTGTCAGTTCCCTTGCTATGTGTCAATGCTTTGGATGACCCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAGgttttttttttttgtaaaattcattttcccaaagtactctggtttttgtattaagtagaagatgtttttcatttgaattag

Basic information

species Oryza sativa
transcript LOC_Os01g65070.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65070.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G005444_T01 (Zea mays), 5'ss of exon 11
GTGCCAGTTATGTTGGTAATGTGTCAGTTCCCTTGCTATGTGTCAATGCTTTGGATGACCCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAGgttttttttttttgtaaaattcattttcccaa------agtactctggtttttgtattaagtagaagat---------gtttttcatttgaattag---------------------------------------------
|||| ||||| || || |||||||||||||||||||| ||| |||||||||||||||| || || |||||||||||||| || ||||||||||| |||||||   ||||| ||||  || ||||  |||  |      |  | |   || | ||||||||     |  |         | | || |||||| |||                                              
GTGCTAGTTACGTCGGAAATGTGTCAGTTCCCTTGCTTTGTATCAATGCTTTGGATGATCCTCTTTGCACAAGGGAGGCTATTCCTTGGGATGAATGCAGgtgaatttttcttgtggaactcatgctcctcatttctgaacagttctgtctatgtattaatctttaattcatcactaggatctttatttgatttatggcccataagaatgtattaatcagaagcgtcttgatttgatttag

upper sequence: LOC_Os01g65070.2 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv18s0076g00210.t01 (Vitis vinifera), 5'ss of exon 11
GTGCCAGTTATGTTGGTAATGTGTCAGTTCCCTTGCTATGTGTCAATGCTTTGGATGACCCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAGgtt-----ttttttttttgtaaaatt-cattttcccaaagtactctggtttttgtattaagtagaagatgtttttcatttgaattag-----------------
|||| |||| |||||| |||||| |||| ||  | || || |||| |||||||||||| ||  ||||||| ||||| ||||| ||||||||||| |||||||       | ||||  ||| | ||  ||| | |   |  |       || || | ||   |      | |||  |   |||| |                   
GTGCTAGTTTTGTTGGAAATGTGGCAGTGCCACTACTCTGCGTCAGTGCTTTGGATGATCCAGTCTGCACTAGGGAAGCCATTCCTTGGGATGAATGCAGgtgagctgctcttttcatgtcatataacatatgctttatcttgataatttcttcttttgtcttattattttttgactcctgaactgacatctcttctatcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88381842|gb|CI682518.1|CI682518
EST:     TTGGATGACCCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAG                         GGCCAACAAGAACATTGTTT
genomic: TTGGATGACCCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAGgttttttttt ... tttgaattagGGCCAACAAGAACATTGTTT