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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGCAATGATCGCTGCTGCTTTTGGTGGAACATTGCCTCCTGGAGTGTCTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGATgtaagatttcactagctataaactctcccaaattcactttaccaatatcttagttttatgggttaatccttccatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g64770.5
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163927563|gb|EG709971.1|EG709971
EST:     CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGAT                         AAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
genomic: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGATgtaagatttc ... ttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
EST: gi|33678526|gb|CF306765.1|CF306765
EST:     CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGAT                         AAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
genomic: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGATgtaagatttc ... ttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
EST: gi|218479207|gb|FG957479.1|FG957479
EST:     CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGAT                         AAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATT
genomic: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGATgtaagatttc ... ttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
EST: gi|2428474|gb|C72937.1|C72937
EST:     CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGAT                         AAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC
genomic: CTGGCATCAATGACCGTTGCACACTTCTAGTTAGCAATCTGAACACTGATgtaagatttc ... ttccatgcagAAAATTGATGAGGATAAGCTCTTCAACCTTTTCTCAATGTATGGGAATATC