1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGCCGGCACGCTCAACGACGGCCCCGGCGTGCCCAACTACATGAGCCTCATGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAGgtacgtcaacagcttagcattgtcatcccgttccgttgatcattcatgcagaacttactttttttttcttcttcattcctgcgtaaaacgaaactgggat...
species | Oryza sativa |
transcript | LOC_Os01g64020.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAG GCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACAEST: gi|88235469|gb|CI236026.1|CI236026
genomic: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAGgtacgtcaac ... aaatgtgcagGCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACA
EST: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAG GCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACAEST: gi|88517854|gb|CI444423.1|CI444423
genomic: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAGgtacgtcaac ... aaatgtgcagGCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACA
EST: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAG GCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACAEST: gi|89164044|gb|CI101132.1|CI101132
genomic: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAGgtacgtcaac ... aaatgtgcagGCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACA
EST: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAG GCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACAEST: gi|88409345|gb|CI559443.1|CI559443
genomic: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAGgtacgtcaac ... aaatgtgcagGCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACA
EST: CAGCCTCGAAAGCTTTTACCAGCAG GCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACAEST: gi|88549103|gb|CI478961.1|CI478961
genomic: CAGCCTCGAAAGCTTCTACCAGCAGgtacgtcaac ... aaatgtgcagGCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACA
EST: TCGAAAGCTTCTACCAGCAG GCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACAEST: gi|86594912|gb|CI258166.1|CI258166
genomic: TCGAAAGCTTCTACCAGCAGgtacgtcaac ... aaatgtgcagGCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACA
EST: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAG GCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACAEST: gi|87010099|gb|CI279196.1|CI279196
genomic: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAGgtacgtcaac ... aaatgtgcagGCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACA
EST: TGGCCATCGCCNTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAG GCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACA
genomic: TGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAGgtacgtcaac ... aaatgtgcagGCTGACAATCTGAGGCAACAAACGTTGCATCAGCTGCGGCGGATTCTAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGGCACGCTCAACGACGGCCCCGGCGTGCCCAACTACATGAGCCTCATGGCCATCGCCCTGGACAAGCTCGCCAGCCTCGAAAGCTTCTACCAGCAGgtacgtcaacagcttagcattgtcatcccgttccgttgatcattcatgcagaacttactttttttttcttcttcattcctgcgtaaaacgaaactgggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccgttcc