Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGTAATGAGTCCTCCTATCCGAGAAGCAGGACATAATAAAGCACTTCAAGTTGCTCTTTCATCAGGAATTTTACAGgtgatacttttcataccctcagtttgacatcacggagttactttttcatcttagctaatatttggaggtcagttagcaaattataggggcgcactgtttgcttgcagaaacttataccttgctaaggggtagaaaacttcacatggatgactatctaactgctcttcatttctatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g59340.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59340.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 8
GTATGTAATGAGTCCTCCTATCCGAGAAGCAGGACATAATAAAGCACTTCAAGTTGCTCTTTCATCAGGAATTTTACAGgtgatacttttcataccctcagtttgacatcacggagttactttttcatcttagctaatatttggaggtcagttagcaaattataggggcgcactgtttgcttgcagaaacttataccttgctaaggggtagaaaacttcacatggatgactatctaactgctcttcatttctatgcag
||| || ||||||||||| ||||| |||||||| |||  ||||||||| |||| |||||||||||| |||||| ||||||||| ||  | | |  | |    |  ||     ||||| |      ||  ||   || | | |    ||   ||    ||   | |    | | |  |||| |  |                                                                         
GTACGTGATGAGTCCTCCAATCCGGGAAGCAGGGCATGGTAAAGCACTCCAAGCTGCTCTTTCATCGGGAATTCTACAGgtgacacact-cgtgtcatacactgaac--tgtggagtcaa----acaaattgcatattgtctttcagtttttttttcaacagtggaactgtatttgttgcatagaa------------------------------------------------------------------------