1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGCAGCTCTGTATGACAAGTTGCTAGTTTCTGAGGATTTGTGGCCATTTGGTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAGgtgattttctaagacgttttatccatttatataccgctagatagtataattgcctccaattgctggtgtttttgctggcaactggttggtaatgttttcc...
species | Oryza sativa |
transcript | LOC_Os01g55350.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAAGAAACAAAGCAACTTCTTCTACAG GTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGAEST: gi|86479975|gb|CI122608.1|CI122608
genomic: GAAGAAACAAAGCAACTTCTTCTACAGgtgattttct ... gtgaactcagGTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGA
EST: GTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAG GTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGAEST: gi|27920888|gb|CB096696.1|CB096696
genomic: GTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAGgtgattttct ... gtgaactcagGTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGA
EST: GTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAG GTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGAEST: gi|25807072|gb|CA763039.1|CA763039
genomic: GTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAGgtgattttct ... gtgaactcagGTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGA
EST: GTGCTCGTCTTAGAGCAAACTATGAGGAAACAAAGCAACTTCTTCTACAG GTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGAEST: gi|25807073|gb|CA763040.1|CA763040
genomic: GTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAGgtgattttct ... gtgaactcagGTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGA
EST: GTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAG GTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGAEST: gi|87032721|gb|CI270356.1|CI270356
genomic: GTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAGgtgattttct ... gtgaactcagGTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGA
EST: GTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAG GTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGAEST: gi|88217700|gb|CI217549.1|CI217549
genomic: GTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAGgtgattttct ... gtgaactcagGTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGA
EST: AGAGCTAACTATGAAGAAACAAAGCAACTTCTTCTACAG GTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGA
genomic: AGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAGgtgattttct ... gtgaactcagGTTGCTGGACACAAAGACCTTCTGGAGGGAGATCCTTACTTGAGGCAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAGCTCTGTATGACAAGTTGCTAGTTTCTGAGGATTTGTGGCCATTTGGTGCTCGTCTTAGAGCAAACTATGAAGAAACAAAGCAACTTCTTCTACAGgtgattttctaagacgttttatccatttatataccgctagatagtataattgcctccaattgctggtgtttttgctggcaactggttggtaatgttttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA