1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAATCAGAAGGGAGCATTGATGGAAACCAATGGATCGCTACAGTACTGAAGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGgtacaaactctgacatcgtttctaatgctgatgattttgtctcgtcttaataatatttgtgtgcttcttatgtatggtgaatgcttaaaagctatagtag...
species | Oryza sativa |
transcript | LOC_Os01g54860.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCG ATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTCEST: gi|86842831|gb|CI342109.1|CI342109
genomic: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGgtacaaactc ... aattcttcagATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTC
EST: GGGCATGCCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCG ATCAAAGAAGGTCGGAACCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTCEST: gi|86425376|gb|CI070473.1|CI070473
genomic: GGGCATG-CGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGgtacaaactc ... aattcttcagATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTC
EST: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCG ATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTCEST: gi|88842427|gb|CI081683.1|CI081683
genomic: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGgtacaaactc ... aattcttcagATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTC
EST: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCG ATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTCEST: gi|396941614|gb|HO188271.1|HO188271
genomic: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGgtacaaactc ... aattcttcagATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTC
EST: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCG ATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTCEST: gi|86499955|gb|CI142588.1|CI142588
genomic: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGgtacaaactc ... aattcttcagATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTC
EST: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCG ATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTCEST: gi|86502592|gb|CI145225.1|CI145225
genomic: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGgtacaaactc ... aattcttcagATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTC
EST: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCG ATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTCEST: gi|86543191|gb|CI183397.1|CI183397
genomic: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGgtacaaactc ... aattcttcagATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTC
EST: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCG ATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTC
genomic: AGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGgtacaaactc ... aattcttcagATCAGAGAAGGTCGGAAGCAGAGCCTGCCGGAATGTTTGAAGAAGGAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATCAGAAGGGAGCATTGATGGAAACCAATGGATCGCTACAGTACTGAAGGGCATGCGAAGATCATCTCCTACTTCACTGAAGATGACTCTTCGATCGgtacaaactctgacatcgtttctaatgctgatgattttgtctcgtcttaataatatttgtgtgcttcttatgtatggtgaatgcttaaaagctatagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG