1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TGGAAGAGACAGATGAACAACCAAAGAAGAAGATCAGGATGGGTATGCCTGCAACACAGTGGATTAGTGTTTATAATGCCAGACGGCCTATGAAACAAAGgtactttttcttatgaggcccgaaagttttagtttatagttagctatatgatccacctttgttaatgcagtacaatgcaacatacatgttctatattttgcag
species | Oryza sativa |
transcript | LOC_Os01g54100.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCAACACAGTGGATTAGTGTTTATAATGCCAGACGGCCTATGAAACAAAG GTATCACTACAACGTTGCAGATTCAAGGCTTGTACAACACATTGACCAAGGEST: gi|38483008|gb|CF966810.1|CF966810
genomic: GCAACACAGTGGATTAGTGTTTATAATGCCAGACGGCCTATGAAACAAAGgtactttttc ... tattttgcagGTATCACTACAACGTTGCAGATTCAAGGCTTGTACAACACATTGACAAAGG
EST: GCAACACAGTGGATTAGTGTTTATAATGCCAGACGGCCTATGAAACAAAG GTATCACTACAACGTTGCAGATTCAAGGCTTGTACAACACATTGACAAAGGEST: gi|58688056|gb|CK076743.1|CK076743
genomic: GCAACACAGTGGATTAGTGTTTATAATGCCAGACGGCCTATGAAACAAAGgtactttttc ... tattttgcagGTATCACTACAACGTTGCAGATTCAAGGCTTGTACAACACATTGACAAAGG
EST: GCAACACAGTGGATTAGTGTTTATAATGCCAGACGGCCTATGAAACAAAG GTATCACTACAACGTTGCAGATTCAAGGCTTGTACAACACATTGACAAAGGEST: gi|163919775|gb|EG710337.1|EG710337
genomic: GCAACACAGTGGATTAGTGTTTATAATGCCAGACGGCCTATGAAACAAAGgtactttttc ... tattttgcagGTATCACTACAACGTTGCAGATTCAAGGCTTGTACAACACATTGACAAAGG
EST: ATGAAACAAAG GTATCACTACAACGTTGCAGATTCAAGGCTTGTACAACACATTGACAAAGG
genomic: ATGAAACAAAGgtactttttc ... tattttgcagGTATCACTACAACGTTGCAGATTCAAGGCTTGTACAACACATTGACAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAGAGACAGATGAACAACCAAAGAAGAAGATCAGGATGGGTATGCCTGCAACACAGTGGATTAGTGTTTATAATGCCAGACGGCCTATGAAACAAAGgtactttttcttatgaggcccgaaagttttagtttatagttagctatatgatccacctttgttaatgcagtacaatgcaacatacatgttctatattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA