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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCATGTGCTGTATCAGCTGCACAGTGTGAGTGTTGCTGATTCACCAGAAAGCACCTTACCTGCTTCTAAAAATTATGAGAACTTCTTTATATCACTTgtaagcaagaaaactttattttgatatttgttttgtattttctctgaaggttgaaatttgggtggtattaatatatgttcattctttcgttcttag

Basic information

species Oryza sativa
transcript LOC_Os01g49940.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g49940.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G466139_T01 (Zea mays), 5'ss of exon 8
AATGCATGTGCTGTATCAGCTGCACAGTGTGAGTGTTGCTGATTCACCAGAAAGCACCTTACCTGCTTCTAAAAATTATGAGAACTTCTTTATATCACTTgtaagcaag---aaaactttattttgatatttgttttgtattttctctgaaggttgaaatttgggtggtattaatatatgttcattctttcgttcttag
|||||||||| ||||||||||||| ||| | ||||||||| |||||||||||||| |     |  | |||||| |||| ||||| |||||||||||||||||||||  |   | ||   |||| |  | | | || |  || |||| |      ||| | ||| |   | ||   || | ||  |  | || |   |||
AATGCATGTGTTGTATCAGCTGCAGAGTATCAGTGTTGCTAATTCACCAGAAAGCTCTACCTCCACCTCTAAACATTACGAGAAGTTCTTTATATCACTTgtaagcctgctcataatagtattgtattgtatcttattaatgttcttt-----ctgagagttgagacatcttttcatgtcttt-tgttctcatctctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628452|gb|CB633463.1|CB633463
EST:     AAAGCACCGCACCTGCTTCTAAAAATTATGAGAACTTCTTTATATCACTT                         GCAAGGTCCTTGATTCACTCGCTACCTGCTTCAGACAAATCTTTTAGCAAA
genomic: AAAGCACCTTACCTGCTTCTAAAAATTATGAGAACTTCTTTATATCACTTgtaagcaaga ... tcgttcttagGCAAGGTCCTTGATTCACTCGCTACCTGCTTCAGACAAATCTTTTAGCAAA
EST: gi|29622214|gb|CB627225.1|CB627225
EST:     AAAGCACCGCACCTGCTTCTAAAAATTATGAGAACTTCTTTATATCACTT                         GCAAGGTCCTTGATTCACTCGCTACCTGCTTCAGACAAATCTTTTAGCAAA
genomic: AAAGCACCTTACCTGCTTCTAAAAATTATGAGAACTTCTTTATATCACTTgtaagcaaga ... tcgttcttagGCAAGGTCCTTGATTCACTCGCTACCTGCTTCAGACAAATCTTTTAGCAAA