1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAGACAACGATTGGCTTTGTACCAAGGTGTATGTCCAGTCCAGATGGAATTTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTGgtaatttctaatatattctaccccttctgattttctctgcgtcactttaataggcattagttaaactcatttatcaggagaatgtcctgacacctgacct...
species | Oryza sativa |
transcript | LOC_Os01g47080.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTG AAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGCEST: gi|29681694|gb|CB677969.1|CB677969
genomic: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTGgtaatttcta ... tattccacagAAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGC
EST: TTTTTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTG AAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGCEST: gi|88689635|gb|CI733211.1|CI733211
genomic: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTGgtaatttcta ... tattccacagAAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGC
EST: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTG AAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGCEST: gi|86426817|gb|CI071914.1|CI071914
genomic: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTGgtaatttcta ... tattccacagAAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGC
EST: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTG AAACATGATATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGCEST: gi|88691146|gb|CI735225.1|CI735225
genomic: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTGgtaatttcta ... tattccacagAAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGC
EST: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTG AAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGCEST: gi|87039966|gb|CI194588.1|CI194588
genomic: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTGgtaatttcta ... tattccacagAAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGC
EST: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTG AAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGCEST: gi|88219873|gb|CI219433.1|CI219433
genomic: TTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTGgtaatttcta ... tattccacagAAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGC
EST: TTGGTGACGCTTTGTCATACTTGCTG AAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGC
genomic: TTGGTGACGCTTTGTCATACTTGCTGgtaatttcta ... tattccacagAAACATGGTATGGTGAAGGAAGGCGAGGAGGTTGCACTTGTTCAAAGTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGACAACGATTGGCTTTGTACCAAGGTGTATGTCCAGTCCAGATGGAATTTTCTGATGATGCTGAGAAGACATTTGGTGACGCTTTGTCATACTTGCTGgtaatttctaatatattctaccccttctgattttctctgcgtcactttaataggcattagttaaactcatttatcaggagaatgtcctgacacctgacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttc