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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGATGACATGGTTGCTTATGCACTTAAGAGTGAAGGGGGCTATGTGTGGGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatatgctaacttctgaaccatgaatttcatgggcaaaaaatgttatcctttttcctagttgcatgataaacgatgctgactgttaaataattcactggatctataaatgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g46610.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46610.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G432128_T01 (Zea mays), 5'ss of exon 11
ATCGATGACATGGTTGCTTATGCACTTAAGAGTGAAGGGGGCTATGTGTGGGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatatgctaacttctgaaccatgaatttcatgggcaaaaaatgttatcctttttcctagttgcatgataaacgatgctga----ctgttaaataattca--ctggatctataaatgtgcag
|| |||||||||||||| || || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   ||||| | ||||||  | || || |    |   ||  |   | ||||| |||  | | |    ||  | |     ||| |    |  |  | |||||||  ||  || ||| |||||||||
ATTGATGACATGGTTGCGTACGCGCTTAAGAGCGAAGGAGGCTATGTGTGGGCTTGCAAGAACTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtcataatatacgaacttcaaatccgtgcacagaacatgctcag--tattatcttttcccgttgcgtgatagtcacaagggctaaagtgcattctagtaattcaacctatatatatcaatgtgcag

upper sequence: LOC_Os01g46610.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G033515_T01 (Zea mays), 5'ss of exon 11
ATCGATGACATGGTTGCTTATGCACTTAAGAGTGAAGGGGGCTATGTGTGGGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatatgctaacttctgaa-ccatgaatttcatgggcaaaaaatgttatcctttttcctagttgcatgataaacgatgctgac-tgttaaataattcactggatctataaatgtgcag
|| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    |||| | |||||||||| ||||| ||   |   ||  |   | ||| | |||  ||| |    |  || ||| | ||| |  ||     |||| ||                    
ATTGATGACATGGTTGCATATGCACTTAAGAGTGAAGGAGGCTACGTGTGGGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCACAAGgtcatgatatacaaacttctgaatccatgcatagaacatgctcag--tattaccttttccccttgcgtgacaatcaacaaggctaaagtgcattctaataca--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38476040|gb|CF960173.1|CF960173
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCGGGGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|163920289|gb|EG709541.1|EG709541
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58665596|gb|CK054282.1|CK054282
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|27577270|gb|CA999964.1|CA999964
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|86434949|gb|CI106182.1|CI106182
EST:     ACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: ACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|163928745|gb|EG714738.1|EG714738
EST:     GGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|29663183|gb|CB659458.1|CB659458
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|33683050|gb|CF311289.1|CF311289
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58681851|gb|CK070538.1|CK070538
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|27554189|gb|CA998089.1|CA998089
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|29671745|gb|CB668020.1|CB668020
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|88675747|gb|CI729319.1|CI729319
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|55408933|gb|CV721309.1|CV721309
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58601771|gb|CK012299.1|CK012299
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|22546869|gb|BU099180.1|BU099180
EST:     GGCTTGCAAGAATNACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTNTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|29674013|gb|CB670288.1|CB670288
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|2310583|gb|C26738.1|C26738
EST:     GCTT-CAAGAATTACGATGGGAGATGTNCAGAGTGATTTCTTAGCTCAAG                         GCTTTTGGTTCATTGGGTTTGATGACATCAGTATTGG
genomic: GCTTGCAAGAATTACGATGG-AGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTT-GGTTCATTGGGTTTGATGACATCAGTATTGG
EST: gi|163925810|gb|EG714934.1|EG714934
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58671792|gb|CK060478.1|CK060478
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|29675351|gb|CB671626.1|CB671626
EST:     CTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: CTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|218485007|gb|FG955773.1|FG955773
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58678891|gb|CK067578.1|CK067578
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|27577333|gb|CB000028.1|CB000028
EST:     TGATTTCCTATCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGCATTT
genomic: TGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|33676140|gb|CF304379.1|CF304379
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|88908732|gb|CI714874.1|CI714874
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|27577291|gb|CA999985.1|CA999985
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58656878|gb|CK045558.1|CK045558
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGAGGTCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58682904|gb|CK071591.1|CK071591
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|109974759|gb|DT807089.1|DT807089
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAATATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|27554181|gb|CA998081.1|CA998081
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58592245|gb|CF990553.1|CF990553
EST:     GCTTGCAAGAATTACGATGTGAGATGTGCAGAGTGATTTCGTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GCTTGCAAGAATTACGATG-GAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|88666968|gb|CI719104.1|CI719104
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|87024270|gb|CI257011.1|CI257011
EST:     GGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGG-TTGATGACATCAGTATTG
genomic: GGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|2280725|gb|C25220.1|C25220
EST:     GCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|427666|gb|D23800.1|D23800
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58684154|gb|CK072841.1|CK072841
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|29643696|gb|CB648703.1|CB648703
EST:     TTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: TTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58601500|gb|CK012028.1|CK012028
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|27576295|gb|CA998989.1|CA998989
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58675276|gb|CK063963.1|CK063963
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTA
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTA
EST: gi|29612962|gb|CB617975.1|CB617975
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|33676517|gb|CF304756.1|CF304756
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|58589438|gb|CF987746.1|CF987746
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGGGCGGG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|87024299|gb|CI257040.1|CI257040
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|426263|gb|D22124.1|D22124
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATT-G
EST: gi|11442840|gb|BF430739.1|BF430739
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|33676128|gb|CF304367.1|CF304367
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCA
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCA
EST: gi|86420101|gb|CI054902.1|CI054902
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|163920750|gb|EG710044.1|EG710044
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|163927556|gb|EG709964.1|EG709964
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|27577341|gb|CB000036.1|CB000036
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|117251413|gb|CT844156.1|CT844156
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
EST: gi|33680077|gb|CF308316.1|CF308316
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATNCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACAT-CAGTATTG
EST: gi|29642812|gb|CB647819.1|CB647819
EST:     GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAG                         GCTTTGGTTCATTGGGTTTGATGACATCAGTATTG
genomic: GGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 38 (downstream exon)
Score: 162

ATCGATGACATGGTTGCTTATGCACTTAAGAGTGAAGGGGGCTATGTGTGGGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatat ... aaatgtgcagGCTTTGGTTCATTGGGTTTGATGACATCAGTATTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCGATGACATGGTTGCTTATGCACTTAAGAGTGAAGGGGGCTATGTGTGGGCTTGCAAGAATTACGATGGAGATGTGCAGAGTGATTTCTTAGCTCAAGgtacgaatatgctaacttctgaaccatgaatttcatgggcaaaaaatgttatcctttttcctagttgcatgataaacgatgctgactgttaaataattcactggatctataaatgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA