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GTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAGgtaagttccgaacaactgtaatccgggtttcctacataatctccatctattgcttttgcatattcaatggtttagttaatgctacctccacccacagtgg...
species | Oryza sativa |
transcript | LOC_Os01g44220.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACTTTGAATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG GCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTTEST: gi|88461656|gb|CI695498.1|CI695498
genomic: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAGgtaagttccg ... attgttttagGCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTT
EST: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG GCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTTEST: gi|2797455|gb|AA750749.1|AA750749
genomic: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAGgtaagttccg ... attgttttagGCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTT
EST: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG GCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTTEST: gi|29680979|gb|CB677254.1|CB677254
genomic: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAGgtaagttccg ... attgttttagGCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTT
EST: AGCATAATGTGAAG GCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTTEST: gi|116875001|gb|EC365509.1|EC365509
genomic: AGCATAATGTGAAGgtaagttccg ... attgttttagGCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTT
EST: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG GCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTTEST: gi|66915625|gb|CX102473.1|CX102473
genomic: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAGgtaagttccg ... attgttttagGCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTT
EST: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG GCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTTEST: gi|29668852|gb|CB665127.1|CB665127
genomic: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAGgtaagttccg ... attgttttagGCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTT
EST: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG GCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTTEST: gi|116875027|gb|EC365535.1|EC365535
genomic: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAGgtaagttccg ... attgttttagGCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTT
EST: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG GCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTTEST: gi|1631864|gb|C19593.1|C19593
genomic: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAGgtaagttccg ... attgttttagGCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTT
EST: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAG GCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTT
genomic: ACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAGgtaagttccg ... attgttttagGCATGTGTCTTCACAGAATATTGGGAGGATATTGGAACAATCAAATCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAAATATGCACACCTGCAAGACTTTGGATCAGAAATTCTCCCGAGAGCTGTTTTAGAGCATAATGTGAAGgtaagttccgaacaactgtaatccgggtttcctacataatctccatctattgcttttgcatattcaatggtttagttaatgctacctccacccacagtgg
- - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA